PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028124636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 474aa MW: 50768.9 Da PI: 8.7527 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32 | 2.1e-10 | 48 | 74 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r+GtC yG +C+++H++ XP_028124636.1 48 PGEPDCAYFMRNGTCGYGIKCRYNHPR 74 5789*********************96 PP | |||||||
2 | zf-CCCH | 40 | 6.4e-13 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f++rtGtCk+G++CkF+H++ XP_028124636.1 94 PGEPACQFYLRTGTCKFGASCKFHHPR 120 57899********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 8.5e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_028124636.1 141 GEKECSYYLKTGQCKFGITCKFHHPE 166 7899********************96 PP | |||||||
4 | zf-CCCH | 37.9 | 2.9e-12 | 297 | 322 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+++++tG Ck+G++C+F+H+p XP_028124636.1 297 GXPECQYYLKTGDCKFGSSCRFHHPP 322 6799********************97 PP | |||||||
5 | zf-CCCH | 30.3 | 7e-10 | 343 | 368 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G +CkF H++ XP_028124636.1 343 GVQPCAFYLQNGYCKFGHTCKFDHPM 368 6789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence |
MELYGRSAGR NGSDRPAEWV PAGPQTGIEE SVRRLGFWNS EILYPERPGE PDCAYFMRNG 60 TCGYGIKCRY NHPRDRSSVG VAVRIGGGEF PERPGEPACQ FYLRTGTCKF GASCKFHHPR 120 NGGGSISNVP PNSYGFPLRP GEKECSYYLK TGQCKFGITC KFHHPEPGGM SMPAPARPFY 180 STVQSSPIPS PDQYGGSSTS YRTGRPPLLP GSYVPGAYGP VLLPPGVVPI PGWSPYSGPV 240 SPVLSPSAPP TVGTSSLYGV PQLSSSAPAF SVPYSPLPST GDPSSVIKRK ECFQEPGXPE 300 CQYYLKTGDC KFGSSCRFHH PPDWVLSKAN YLLSPLGFPL RPGVQPCAFY LQNGYCKFGH 360 TCKFDHPMGT GRYSPSASSL TDMSVAPYMV GPSLATMAPS FSYSELRPEF ISGSNPHSSR 420 MPSSGNTSSS SVGLIFSQTG SASLSDVQLS SQSTAPLSIS TISTRQGGEV RRTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-143 | C3H family protein |