PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028124616.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 424aa MW: 45831.5 Da PI: 9.7512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028124616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	191	213	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L+ H + H XP_028124616.1 191 TCHKCGEQFGKWEALEAHHLSkH 213 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MPTVWFSLRK SLHCKSEPSD VHDPKSRRHL STILTRKAGR SGCSRSIANL KDVIHGSKRH 60 IEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITGFG GGGGGGGGGE SGGDSTFVGT 120 LRPGTPGPGG HPTMHYFNPS IRAQRKTAAL WSHREGSGFG GSANSAGGGN GTLSNPKISL 180 QTDGNGPLAV TCHKCGEQFG KWEALEAHHL SKHAVTELVE GDSSRKIVEI ICRTSWLKSE 240 NHCGRIERVL KVHNMQKTLA RFEEYREVVK IKASKLPKKH SRCIADGNEL LRFYGTIVAC 300 SLGMNGSSTL CVSEKCCVCR IIRNGFSTRK ELKGGVGVFT TSTSGRAFES IEIFEDNPSV 360 RKALIVCRVI AGRVHRPLEN IQEMAGQSGF DSLAGKVGLY SNIEELYLLN PKALLPCFVV 420 ICKP

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MPTVWFSLRK SLHCKSEPSD VHDPKSRRHL STILTRKAGR SGCSRSIANL KDVIHGSKRH  60
IEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITGFG GGGGGGGGGE SGGDSTFVGT  120
LRPGTPGPGG HPTMHYFNPS IRAQRKTAAL WSHREGSGFG GSANSAGGGN GTLSNPKISL  180
QTDGNGPLAV TCHKCGEQFG KWEALEAHHL SKHAVTELVE GDSSRKIVEI ICRTSWLKSE  240
NHCGRIERVL KVHNMQKTLA RFEEYREVVK IKASKLPKKH SRCIADGNEL LRFYGTIVAC  300
SLGMNGSSTL CVSEKCCVCR IIRNGFSTRK ELKGGVGVFT TSTSGRAFES IEIFEDNPSV  360
RKALIVCRVI AGRVHRPLEN IQEMAGQSGF DSLAGKVGLY SNIEELYLLN PKALLPCFVV  420
ICKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-167	C2H2 family protein