PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028124331.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79366 Da    PI: 6.1592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028124331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1957112156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r++L ++lgL+  q+k+WFqN+R+++k
  XP_028124331.1  57 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKDLGRRLGLEPLQIKFWFQNKRTQMK 112
                     688999***********************************************998 PP
2START211.33.6e-662434641206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++el+++a+a+ep+W   +     e + ++++l++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a t
  XP_028124331.1 243 ELAVAAMEELIRMAQAGEPLWIPNPdfnstEVLSEEDYLRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWTSVFSgivsRAIT 336
                     57899********************9999999************999********************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     le +s+g      galq+m ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ q       + R++++pSg+li++++ng+skv+wveh
  XP_028124331.1 337 LEILSTGvagnynGALQVMAAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLQTSA----ISRCRRRPSGCLIQEVPNGYSKVIWVEH 427
                     ************************************************************976....8*************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v++++r +h+++r+lv+s+la+gak+wvatl+rqce+
  XP_028124331.1 428 VEVDDRAVHNIYRPLVNSSLAFGAKRWVATLDRQCER 464
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MFQPNMFDSH HLLDMTHKMP ETELDMIRDE EFESKSGTDI MEAPSGDDQD PNQRPKKKRY  60
HRHTQHQIQE MESFFKECPH PDDKQRKDLG RRLGLEPLQI KFWFQNKRTQ MKAQHERHEN  120
SQLRAENEKL RGDNIRYKEA LSNATCPNCG GPAAIGEMSF DEQHLRIENA RLREEIDRIS  180
GIAAKYVGKP MLSYPHGPPR SFDLGVGNFS AHSSGLVGDL FGAGDLLRSV SGPTEADKPV  240
IIELAVAAME ELIRMAQAGE PLWIPNPDFN STEVLSEEDY LRTFPRGIGP KPLGLKSEAS  300
RESAVVIMNH INLVEILMDV NQWTSVFSGI VSRAITLEIL STGVAGNYNG ALQVMAAEFQ  360
VPSPLVPTRE NYFVRYCKQH ADGTWAVVDV SLDNLQTSAI SRCRRRPSGC LIQEVPNGYS  420
KVIWVEHVEV DDRAVHNIYR PLVNSSLAFG AKRWVATLDR QCERLASAMA NNIPAGDIGV  480
ITSPEGRKSM LKLAERMVMS FCTGVGASTA HTWTTLSGSG ADDVRVMTRK SMDDPGRPPG  540
IVLSAATSFW IPVPPKRVFD FLRDEHSRSE WDILSNGGLV QEMAHIANGR DPGNSVSLLR  600
VNSANSSQSN MLILQESCTD STGSYVIYAP VDIVAMNVVL SGGDPDYVAL LPSGFAILPD  660
GATHHGGGIS EVGTGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIKCT VERIKSSVGG  720
VNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein