PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123891.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 274aa MW: 31006.2 Da PI: 5.0098

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128	4.4e-40	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l++ ++++am+++++++++ra+dPv G++++i++lq+q++ +++el+ XP_028123891.1 33 ACAACKYQRRKCAPDCILAPYFPHDRHRQFLNAHKLFGVSNITKIIRNLDPPDKDQAMRTIIFQSDVRASDPVGGCYRIIRDLQRQIDYTQTELV 127 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_028123891.1 128 IVLQQ 132 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MSNNSNNNIN NNNNNHTNNT SNTSTSKVNG TQACAACKYQ RRKCAPDCIL APYFPHDRHR 60 QFLNAHKLFG VSNITKIIRN LDPPDKDQAM RTIIFQSDVR ASDPVGGCYR IIRDLQRQID 120 YTQTELVIVL QQLAICRAQA AAAASAHLQP QTPLPPDVDD SLTVNCDSII NPEDPLSHVR 180 DDFHETREEE EYLVLHDDHD DDDNNNNNNN NHVVPLHDIA AWAMHDSMSS SLHDKQAFVD 240 DCKPTFLDIG GERLELKFDH EEEAIGQRFV PFIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-54	LBD family protein