PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123652.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 429aa MW: 47176.8 Da PI: 8.5695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.1	4.2e-15	258	304	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++++P++ K +Ka++L +++eY+k Lq XP_028123652.1 258 VHNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKVLQ 304 6***********************8.....7**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MSQCVPSWDM DENHTPPTLT LRAHSNRNSS CPDVPLLDYE VTELTWKNGQ LAMHGLGPPR 60 VPNKLPVAAA KYTWEKPRAG GTLESIVDQA TTTCFPHPKT TAAASDLVPW FDHRAASAAA 120 VTMDALVPCS TAGAAQEGIS TCVIGRSTRV GSYSEVEEEE KKKRARVAHV QEWSSRDNSD 180 RRQLAIDTCE RELGARGLTS TSLENTSSGK HWTKATAGDD HDSVSHSRSQ IAAGEEENKK 240 KPTGKSSIST KRCRAAAVHN QSERKRRDKI NQRMKTLQKM VPNSSKTDKA SMLDEVIEYL 300 KVLQAQVQMM SRMSMPMPSM MFPMALQQQL QLSMMAPMGM GMDMNTIGRP NAAGIPPILH 360 PTAAFMPLTS WDGIGDRLVP HPTVMPDPMA TFLSCQSQPM NMEAYNRMAA LYQQLHQPPP 420 PPPPPPKNN

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MSQCVPSWDM DENHTPPTLT LRAHSNRNSS CPDVPLLDYE VTELTWKNGQ LAMHGLGPPR  60
VPNKLPVAAA KYTWEKPRAG GTLESIVDQA TTTCFPHPKT TAAASDLVPW FDHRAASAAA  120
VTMDALVPCS TAGAAQEGIS TCVIGRSTRV GSYSEVEEEE KKKRARVAHV QEWSSRDNSD  180
RRQLAIDTCE RELGARGLTS TSLENTSSGK HWTKATAGDD HDSVSHSRSQ IAAGEEENKK  240
KPTGKSSIST KRCRAAAVHN QSERKRRDKI NQRMKTLQKM VPNSSKTDKA SMLDEVIEYL  300
KVLQAQVQMM SRMSMPMPSM MFPMALQQQL QLSMMAPMGM GMDMNTIGRP NAAGIPPILH  360
PTAAFMPLTS WDGIGDRLVP HPTVMPDPMA TFLSCQSQPM NMEAYNRMAA LYQQLHQPPP  420
PPPPPPKNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	268	ERKRRD
2	264	269	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	6e-94	bHLH family protein