PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028123644.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24858 Da PI: 7.1819 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.3 | 2.7e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l++ + p++q+ ++ +v+k+FG++ ++++l+a+p+++r+ +++sl++eA+ r+ +P++Gavg++++++++++q+ XP_028123644.1 2 SCSGCRVLRKGCNENCILRQSLqgietPQAQAYATVFVAKFFGRAGLMSFLSAVPDSQRPPLFQSLLFEACGRTVNPINGAVGLLWTGNWHICQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_028123644.1 97 AVETVLR 103 *998875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MSCSGCRVLR KGCNENCILR QSLQGIETPQ AQAYATVFVA KFFGRAGLMS FLSAVPDSQR 60 PPLFQSLLFE ACGRTVNPIN GAVGLLWTGN WHICQAAVET VLRGGVLRPI PEFSGETPAD 120 EFDDASNNNT KSMDFFGSLD LHSASKVKDF NELTARSQPI ADLDLCLEQS LKTAGGRVNR 180 RPEKRRAETP SSSKSEESET TTLESGGSAY NQTLQGGRNE GKLLRLFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-67 | LBD family protein |