PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123377.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 590aa MW: 65561.8 Da PI: 5.591

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C+ Gd C +aHg XP_028123377.1 266 PCPDFRK-GACRLGDMCEYAHG 286 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MNNLTVETED TFASLLDFAA NNDIEGFERY IECDLSGIDE VGLWYGRQKG SKQMVLEHRT 60 PLMVAATYGS VDVVKLILSL SDVVVDVNRP HGLDRNTALH CAASGGSMNA VDVVKLLLEA 120 GADPNMINAN GHYPIDVIVV SPKFQDLKFS LEKFLTTNDS VSTATSNSNS PPQSPSLSSS 180 SNSNSSPNSS RFINVTLSEK KEYPIDPSMP DIKNTIYSTD EFRMFSFKVR PCSRAYSHDW 240 TDCPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRLGDM CEYAHGVFES WLHPAQYRTR 300 LCKDGTSCNR RVCFFAHTQQ ELRPLYVSTG SAIMSPSPFT PPLSPSTNGI SNMGWPHPNV 360 PALNLPGSNN HQSSSRLRSS LNARDFASED LDLLPDFDVQ QQQLLQNELC RFSQLGISNN 420 SLNCSAESSS PRFSDQALAS SVFSPTHKSA IFNQFQHQTI SPMSPRVSLL AQHEKQKQQF 480 RSRSFRDLGS NSASDSWSKW GSSNGKPDWS VNPDEFGRLR RSSSFELGNN GDEPDLSWVQ 540 SLVKESPQEV ADAAGFLSEG SNLNSQIEAN DQSVLGDWME QMQLDQLMAW

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MNNLTVETED TFASLLDFAA NNDIEGFERY IECDLSGIDE VGLWYGRQKG SKQMVLEHRT  60
PLMVAATYGS VDVVKLILSL SDVVVDVNRP HGLDRNTALH CAASGGSMNA VDVVKLLLEA  120
GADPNMINAN GHYPIDVIVV SPKFQDLKFS LEKFLTTNDS VSTATSNSNS PPQSPSLSSS  180
SNSNSSPNSS RFINVTLSEK KEYPIDPSMP DIKNTIYSTD EFRMFSFKVR PCSRAYSHDW  240
TDCPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRLGDM CEYAHGVFES WLHPAQYRTR  300
LCKDGTSCNR RVCFFAHTQQ ELRPLYVSTG SAIMSPSPFT PPLSPSTNGI SNMGWPHPNV  360
PALNLPGSNN HQSSSRLRSS LNARDFASED LDLLPDFDVQ QQQLLQNELC RFSQLGISNN  420
SLNCSAESSS PRFSDQALAS SVFSPTHKSA IFNQFQHQTI SPMSPRVSLL AQHEKQKQQF  480
RSRSFRDLGS NSASDSWSKW GSSNGKPDWS VNPDEFGRLR RSSSFELGNN GDEPDLSWVQ  540
SLVKESPQEV ADAAGFLSEG SNLNSQIEAN DQSVLGDWME QMQLDQLMAW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein