PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123055.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 446aa MW: 49421.6 Da PI: 9.3436

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028123055.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	12.4	0.00049	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_028123055.1 146 WKCEKCSKIYAVQSDWKAHSKTC 168 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MSNSTSLSGE ASVSSVTRVH DLASLNPMVS TISHHQPQKI KKKRNLPGNP DPDAEVIALS 60 PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNSKENRKKA YVCPEPSCVH 120 HNPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKIYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRKDSFITH RAFCDALAEE SARLTVNQFE TTTNPIAQPF HHLLHPQPQN PPPPHFPFSS 240 IHHHQHFPNP PAQQHIHISL NPWEDTTQNP IPTLNQNPLH IKPETTHLPM LPPPPISSSS 300 FFQEPQPLTH KNLVNSPYRN LPTSSNNATS SAHLSATALL QKATIIGHVG GRGTGMSPQE 360 YLSFASGNLA TWQKSDRLTR DFLGLTGECG GGNGGGGSVD ANVNVRNMLS FTGGVEFPTY 420 ERDHSLLKAQ GFGFGEPAAS ETWGNC

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MSNSTSLSGE ASVSSVTRVH DLASLNPMVS TISHHQPQKI KKKRNLPGNP DPDAEVIALS  60
PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNSKENRKKA YVCPEPSCVH  120
HNPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKIYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRKDSFITH RAFCDALAEE SARLTVNQFE TTTNPIAQPF HHLLHPQPQN PPPPHFPFSS  240
IHHHQHFPNP PAQQHIHISL NPWEDTTQNP IPTLNQNPLH IKPETTHLPM LPPPPISSSS  300
FFQEPQPLTH KNLVNSPYRN LPTSSNNATS SAHLSATALL QKATIIGHVG GRGTGMSPQE  360
YLSFASGNLA TWQKSDRLTR DFLGLTGECG GGNGGGGSVD ANVNVRNMLS FTGGVEFPTY  420
ERDHSLLKAQ GFGFGEPAAS ETWGNC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	109	KLKQRNSKENRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-115	C2H2 family protein