PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123052.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 452aa MW: 50038.4 Da PI: 9.3436

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028123052.1 76 FVCEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	12.3	0.0005	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_028123052.1 152 WKCEKCSKIYAVQSDWKAHSKTC 174 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MFPAAVMSNS TSLSGEASVS SVTRVHDLAS LNPMVSTISH HQPQKIKKKR NLPGNPDPDA 60 EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNSK ENRKKAYVCP 120 EPSCVHHNPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSRK DSFITHRAFC DALAEESARL TVNQFETTTN PIAQPFHHLL HPQPQNPPPP 240 HFPFSSIHHH QHFPNPPAQQ HIHISLNPWE DTTQNPIPTL NQNPLHIKPE TTHLPMLPPP 300 PISSSSFFQE PQPLTHKNLV NSPYRNLPTS SNNATSSAHL SATALLQKAT IIGHVGGRGT 360 GMSPQEYLSF ASGNLATWQK SDRLTRDFLG LTGECGGGNG GGGSVDANVN VRNMLSFTGG 420 VEFPTYERDH SLLKAQGFGF GEPAASETWG NC

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MFPAAVMSNS TSLSGEASVS SVTRVHDLAS LNPMVSTISH HQPQKIKKKR NLPGNPDPDA  60
EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNSK ENRKKAYVCP  120
EPSCVHHNPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL TVNQFETTTN PIAQPFHHLL HPQPQNPPPP  240
HFPFSSIHHH QHFPNPPAQQ HIHISLNPWE DTTQNPIPTL NQNPLHIKPE TTHLPMLPPP  300
PISSSSFFQE PQPLTHKNLV NSPYRNLPTS SNNATSSAHL SATALLQKAT IIGHVGGRGT  360
GMSPQEYLSF ASGNLATWQK SDRLTRDFLG LTGECGGGNG GGGSVDANVN VRNMLSFTGG  420
VEFPTYERDH SLLKAQGFGF GEPAASETWG NC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	115	KLKQRNSKENRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-115	C2H2 family protein