PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028122852.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 359aa    MW: 39646.7 Da    PI: 7.4328
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028122852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16.2e-13327126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +++elCr+f+r G C+yGdrCkF H+
  XP_028122852.1  3 PRRELCRNFQR-GSCQYGDRCKFLHV 27
                    689********.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MPPRRELCRN FQRGSCQYGD RCKFLHVAQQ QQQQPKPNVF GYGAQSTTPF HRLNSQQQQQ  60
KPNPFGFGVH GSSQPRVPND FGSKQNQYKP FENKWTRNGG SQVSRQPDNQ PPTANHKCTD  120
PESCKQQIVE DFQHERPLWK LTCYGHNKSS PCDIIGDVSY EELRAAAYDD AKRGLSLQST  180
VERERNLLNA KLLEFENLLR NPYAVPQNPS IATQSAFPGA TPSVSSMTAQ NSNPPSVSSF  240
SQLGASLNMG FGMRPATPTN NAFGSTQISS QTTSVFETNN SPFGSSVSPQ VPSSASFQSS  300
ILPNGPNSAS TAVEQLSVNV DTIDNMTRKN GAVDDAIWLK EEWNPGEIPE EAPPDKYIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-73C3H family protein