PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028122851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 398aa MW: 43648 Da PI: 7.7801 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.9 | 7e-13 | 3 | 27 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elCr+f+r G C+yGdrCkF H+ XP_028122851.1 3 PRRELCRNFQR-GSCQYGDRCKFLHV 27 689********.*************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence |
MPPRRELCRN FQRGSCQYGD RCKFLHVAQQ QQQQPKPNVF GYGAQSTTPF HRLNSQQQQQ 60 KPNPFGFGVH GSSQPRVPND FGSKQNQYKP FENKWTRNGG SQVSRQPDNQ PPTANHKCTD 120 PESCKQQIVE DFQHERPLWK LTCYGHNKSS PCDIIGDVSY EELRAAAYDD AKRGLSLQST 180 VERERNLLNA KLLEFENLLR NPYAVPQNPS IATQSAFPGA TPSVSSMTAQ NSNPPSVSSF 240 SQLGASLNMG FGMRPATPTN NAFGSTQISS QTTSVFETNN SPFGSSGSFG GQLRNQSFGS 300 SFASNAASFS NSVVSAERNP FFTSAVSPQV PSSASFQSSI LPNGPNSAST AVEQLSVNVD 360 TIDNMTRKNG AVDDAIWLKE EWNPGEIPEE APPDKYIF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 1e-67 | C3H family protein |