PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028122243.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 504aa    MW: 56767.8 Da    PI: 6.6768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028122243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3572.8e-1091444991374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lLlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf +A+a+r+ +s+ ++++ l          + + +++++f+++sP++kf+
  XP_028122243.1 144 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFSKAMASRVINSWLGICSPLINH-------KGVHSSFQFFNNISPFIKFA 231
                     5789*******************************9999**********************9766433.......34567899************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t NqaIlea+++++rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+gs    s   l etg++L++fA++lg++fef++ +ak++ d+
  XP_028122243.1 232 HFTSNQAILEAFHRHDRVHIIDLDIMQGLQWPALFHILATRLEGPPHVRMTGMGS----SIVLLIETGKQLSSFAKRLGLSFEFHP-IAKKFGDI 321
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L++++gEa+aV++    h+l+d +++  +    +++l+++l P+v+++veq++ h ++ Fl+rf+ al+yys++fdsl a lp++++ r+ 
  XP_028122243.1 322 DISMLQIRRGEATAVHWLQ--HSLYDATGPDWK----TMRLLQELAPRVITLVEQDIAH-GGAFLDRFVGALHYYSTIFDSLGAVLPSDDQSRHH 409
                     ******************9..999999999888....**********************.678******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+ ll rei n++a  g +r  +  ++++Wr+ l +  F +vp+s + ++qa+l+l++++  +gy++ + +g+l lgWkd +L+++SaW+
  XP_028122243.1 410 VEHCLLYREINNILAIGGPARSGED-KFRHWRSELARNCFMQVPMSGNSMAQAQLILNMFPhIHGYSLVQGDGTLRLGWKDTSLFTASAWT 499
                     ********************77665.5***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MMKGGFQVVH GALDLIQPHE QWDYNHVPYP TVTANPFPRS MVENNCTNSE KNELSMWVEH  60
VTKQLIEDLP ETGSESFQAD TTMVFDDNNI VPTPLLAEFR PRKIPKRPYF DSPGEQIRWL  120
GDDQANFNEG SKGLSRLDEQ GLSLITLLLE CAVAISVDNL GEAHRMLLEL TQMASPYGPS  180
CAERVVAYFS KAMASRVINS WLGICSPLIN HKGVHSSFQF FNNISPFIKF AHFTSNQAIL  240
EAFHRHDRVH IIDLDIMQGL QWPALFHILA TRLEGPPHVR MTGMGSSIVL LIETGKQLSS  300
FAKRLGLSFE FHPIAKKFGD IDISMLQIRR GEATAVHWLQ HSLYDATGPD WKTMRLLQEL  360
APRVITLVEQ DIAHGGAFLD RFVGALHYYS TIFDSLGAVL PSDDQSRHHV EHCLLYREIN  420
NILAIGGPAR SGEDKFRHWR SELARNCFMQ VPMSGNSMAQ AQLILNMFPH IHGYSLVQGD  480
GTLRLGWKDT SLFTASAWTS HASR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-147GRAS family protein