PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028122015.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 546aa MW: 60119.4 Da PI: 8.4551

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028122015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_028122015.1 81 FICEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	12.4	0.0005	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_028122015.1 158 WKCEKCSKRYAVQSDWKAHSKIC 180 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MMMNSLILDD NMSNLTSASN EASISSSNRN EVGSLYPQQQ SFASPNQPPL AKKKRNLPGN 60 PDPEAEVMAL SPKTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRANKEVIKK 120 KVYVCPEPTC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC 180 GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARSITLA NHPLLSSSQP PITSSSHFNL 240 HLQNHHLHNP PTLQPFPLMK REQQDQSFNN LIRPPPELPP WLACQTLVGE GGAPPPIDLS 300 TQLFSSRLDQ HQHHHSFIHH NENPNPSTSL STTTTTPSLP SFQPTSSPHM SATALLQKAA 360 QMGVTMSKPC PSESLILNRP HQAHHMSCSS TSLASSTAGS GLDLSSREEM EISGFSQSLA 420 SFGNKAVVTS GYMEQVGATM VGSSLPCGSG FEGSSSFEEA LNGMLNPRME SHFQETFSKP 480 AAMETHLRRS NEGGGGGGGN DGLTRDFLGL RTISHRGFPN IAGLDHMNSP SSSYDQQNQN 540 QTPWQG

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MMMNSLILDD NMSNLTSASN EASISSSNRN EVGSLYPQQQ SFASPNQPPL AKKKRNLPGN  60
PDPEAEVMAL SPKTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRANKEVIKK  120
KVYVCPEPTC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARSITLA NHPLLSSSQP PITSSSHFNL  240
HLQNHHLHNP PTLQPFPLMK REQQDQSFNN LIRPPPELPP WLACQTLVGE GGAPPPIDLS  300
TQLFSSRLDQ HQHHHSFIHH NENPNPSTSL STTTTTPSLP SFQPTSSPHM SATALLQKAA  360
QMGVTMSKPC PSESLILNRP HQAHHMSCSS TSLASSTAGS GLDLSSREEM EISGFSQSLA  420
SFGNKAVVTS GYMEQVGATM VGSSLPCGSG FEGSSSFEEA LNGMLNPRME SHFQETFSKP  480
AAMETHLRRS NEGGGGGGGN DGLTRDFLGL RTISHRGFPN IAGLDHMNSP SSSYDQQNQN  540
QTPWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-112	C2H2 family protein