PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028122013.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 292aa MW: 32589.5 Da PI: 5.7536

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028122013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117	1.2e-36	43	143	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa++C+lapyfpa+ +k+f n+hklFG+ n++k+lk++++ ++e+a++s++ +++ ra dPv G+++ i +lq+++eq +ael+ XP_028122013.1 43 ACAACKYQRRKCAPNCPLAPYFPAHLHKQFLNAHKLFGVGNIMKVLKHIQPCDQETAVKSIIAHSNLRAIDPVGGCYRRICQLQKHIEQYEAELE 137 7******************************************************************************************** PP DUF260 96 llkeel 101 l++++l XP_028122013.1 138 LVHQHL 143 9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MSNTINHNPN TNTNTNTSTN INDTPTNTST RVGPGGSTTG SQACAACKYQ RRKCAPNCPL 60 APYFPAHLHK QFLNAHKLFG VGNIMKVLKH IQPCDQETAV KSIIAHSNLR AIDPVGGCYR 120 RICQLQKHIE QYEAELELVH QHLNMCRAAQ EQENPNVDSL SGYDATCNQM MGSHRRSDCD 180 RGIEDDELVF FDEDCYNMLG FDVARQCAIK VDVEASCSSM GVNGKQVFVN ESEAIKPLLG 240 IFDEKQPIVP FESKESIEYR ELKEEVDSSV QLKQEHDLKG NAYLFSLTNS ND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	8e-40	LBD family protein