PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121595.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 570aa MW: 64823 Da PI: 5.8658

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.5	6.4e-22	11	55	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+++nr +t+skR+ng++KKA+ELSvLCd+++ +++fs++g+ XP_028121595.1 11 KRLESSTNRLTTYSKRKNGLIKKANELSVLCDIDIVLLMFSPSGR 55 689***************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MQMGRVKLKI KRLESSTNRL TTYSKRKNGL IKKANELSVL CDIDIVLLMF SPSGRPVMWK 60 GRNSIIEGII ERFAELTPQE RAKRKLESFD ALKRSYRKSD HIVNVQDFFG SSYEKIGDLT 120 IQANLLRTQL SEIQKRLSDW NNPDKIDSFE LLEQMEDYMR ELFDQIQTQK QFSAVGCTNQ 180 FQNGMHVPFS FGVEHQVRHL KEPNLLPKRC LFSRETELSA GNSFANVLGY FGTVEKEDIA 240 CTGQESGVLN ELLGTESLRN ELIGLRTGTL RNELTKTECL NNELMKTESL KNESSNGSDN 300 FHSLQLQNGM HLPFSLGVEQ VQQFSWIQND NNQHMASPKE SNLFPRRGTE LLAGNSFGNY 360 SGYFGTTEKP DIASIGQASG VLSELLRTES LMNELIGLKS ETLRNNLTQN ESLMNDLIKT 420 ESSSNKLIKS EFLTNELIKT EHLMNELIKT ESLRKELIKA EPMRNELMNS KSLRNELINT 480 KSLRLQLYGQ DSYPPFNFSI LPDNKFQPAQ QTNLQQSIDD YCAEGNFEQP QSGYDSMHCN 540 CASTSGPSSI ATFDEYLYPQ QHYSPDGHVS

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MQMGRVKLKI KRLESSTNRL TTYSKRKNGL IKKANELSVL CDIDIVLLMF SPSGRPVMWK  60
GRNSIIEGII ERFAELTPQE RAKRKLESFD ALKRSYRKSD HIVNVQDFFG SSYEKIGDLT  120
IQANLLRTQL SEIQKRLSDW NNPDKIDSFE LLEQMEDYMR ELFDQIQTQK QFSAVGCTNQ  180
FQNGMHVPFS FGVEHQVRHL KEPNLLPKRC LFSRETELSA GNSFANVLGY FGTVEKEDIA  240
CTGQESGVLN ELLGTESLRN ELIGLRTGTL RNELTKTECL NNELMKTESL KNESSNGSDN  300
FHSLQLQNGM HLPFSLGVEQ VQQFSWIQND NNQHMASPKE SNLFPRRGTE LLAGNSFGNY  360
SGYFGTTEKP DIASIGQASG VLSELLRTES LMNELIGLKS ETLRNNLTQN ESLMNDLIKT  420
ESSSNKLIKS EFLTNELIKT EHLMNELIKT ESLRKELIKA EPMRNELMNS KSLRNELINT  480
KSLRLQLYGQ DSYPPFNFSI LPDNKFQPAQ QTNLQQSIDD YCAEGNFEQP QSGYDSMHCN  540
CASTSGPSSI ATFDEYLYPQ QHYSPDGHVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-65	M-type_MADS family protein