PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121594.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 604aa MW: 68462.2 Da PI: 5.8123

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.4	6.9e-22	72	116	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+++nr +t+skR+ng++KKA+ELSvLCd+++ +++fs++g+ XP_028121594.1 72 KRLESSTNRLTTYSKRKNGLIKKANELSVLCDIDIVLLMFSPSGR 116 689***************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MTDFFVHSFL QFGAIRMPTH FSLSLSLSLP FNGVCYSQRD LSVPFSEGSI AHIQTFLSVS 60 TSRMGRVKLK IKRLESSTNR LTTYSKRKNG LIKKANELSV LCDIDIVLLM FSPSGRPVMW 120 KGRNSIIEGI IERFAELTPQ ERAKRKLESF DDLTIQANLL RTQLSEIQKR LSDWNNPDKI 180 DSFELLEQME DYMRELFDQI QTQKQFSAVG CTNQFQNGMH VPFSFGVEHQ VRHLKEPNLL 240 PKRCLFSRET ELSAGNSFAN VLGYFGTVEK EDIACTGQES GVLNELLGTE SLRNELIGLR 300 TGTLRNELTK TECLNNELMK TESLKNESSN GSDNFHSLQL QNGMHLPFSL GVEQVQQFSW 360 IQNDNNQHMA SPKESNLFPR RGTELLAGNS FGNYSGYFGT TEKPDIASIG QASGVLSELL 420 RTESLMNELI GLKSETLRNN LTQNESLMND LIKTESSSNK LIKSEFLTNE LIKTEHLMNE 480 LIKTESLRKE LIKAEPMRNE LMNSKSLRNE LINTKSLRLQ LYGQDSYPPF NFSILPDNKF 540 QPAQQTNLQQ SIDDYCAEGN FEQPQSGYDS MHCNCASTSG PSSIATFDEY LYPQQHYSPD 600 GHVS

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MTDFFVHSFL QFGAIRMPTH FSLSLSLSLP FNGVCYSQRD LSVPFSEGSI AHIQTFLSVS  60
TSRMGRVKLK IKRLESSTNR LTTYSKRKNG LIKKANELSV LCDIDIVLLM FSPSGRPVMW  120
KGRNSIIEGI IERFAELTPQ ERAKRKLESF DDLTIQANLL RTQLSEIQKR LSDWNNPDKI  180
DSFELLEQME DYMRELFDQI QTQKQFSAVG CTNQFQNGMH VPFSFGVEHQ VRHLKEPNLL  240
PKRCLFSRET ELSAGNSFAN VLGYFGTVEK EDIACTGQES GVLNELLGTE SLRNELIGLR  300
TGTLRNELTK TECLNNELMK TESLKNESSN GSDNFHSLQL QNGMHLPFSL GVEQVQQFSW  360
IQNDNNQHMA SPKESNLFPR RGTELLAGNS FGNYSGYFGT TEKPDIASIG QASGVLSELL  420
RTESLMNELI GLKSETLRNN LTQNESLMND LIKTESSSNK LIKSEFLTNE LIKTEHLMNE  480
LIKTESLRKE LIKAEPMRNE LMNSKSLRNE LINTKSLRLQ LYGQDSYPPF NFSILPDNKF  540
QPAQQTNLQQ SIDDYCAEGN FEQPQSGYDS MHCNCASTSG PSSIATFDEY LYPQQHYSPD  600
GHVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	8e-52	M-type_MADS family protein