PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121592.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 631aa MW: 71589.8 Da PI: 6.1767

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.3	7.3e-22	72	116	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+++nr +t+skR+ng++KKA+ELSvLCd+++ +++fs++g+ XP_028121592.1 72 KRLESSTNRLTTYSKRKNGLIKKANELSVLCDIDIVLLMFSPSGR 116 689***************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MTDFFVHSFL QFGAIRMPTH FSLSLSLSLP FNGVCYSQRD LSVPFSEGSI AHIQTFLSVS 60 TSRMGRVKLK IKRLESSTNR LTTYSKRKNG LIKKANELSV LCDIDIVLLM FSPSGRPVMW 120 KGRNSIIEGI IERFAELTPQ ERAKRKLESF DALKRSYRKS DHIVNVQDFF GSSYEKIGDL 180 TIQANLLRTQ LSEIQKRLSD WNNPDKIDSF ELLEQMEDYM RELFDQIQTQ KQFSAVGCTN 240 QFQNGMHVPF SFGVEHQVRH LKEPNLLPKR CLFSRETELS AGNSFANVLG YFGTVEKEDI 300 ACTGQESGVL NELLGTESLR NELIGLRTGT LRNELTKTEC LNNELMKTES LKNESSNGSD 360 NFHSLQLQNG MHLPFSLGVE QVQQFSWIQN DNNQHMASPK ESNLFPRRGT ELLAGNSFGN 420 YSGYFGTTEK PDIASIGQAS GVLSELLRTE SLMNELIGLK SETLRNNLTQ NESLMNDLIK 480 TESSSNKLIK SEFLTNELIK TEHLMNELIK TESLRKELIK AEPMRNELMN SKSLRNELIN 540 TKSLRLQLYG QDSYPPFNFS ILPDNKFQPA QQTNLQQSID DYCAEGNFEQ PQSGYDSMHC 600 NCASTSGPSS IATFDEYLYP QQHYSPDGHV S

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MTDFFVHSFL QFGAIRMPTH FSLSLSLSLP FNGVCYSQRD LSVPFSEGSI AHIQTFLSVS  60
TSRMGRVKLK IKRLESSTNR LTTYSKRKNG LIKKANELSV LCDIDIVLLM FSPSGRPVMW  120
KGRNSIIEGI IERFAELTPQ ERAKRKLESF DALKRSYRKS DHIVNVQDFF GSSYEKIGDL  180
TIQANLLRTQ LSEIQKRLSD WNNPDKIDSF ELLEQMEDYM RELFDQIQTQ KQFSAVGCTN  240
QFQNGMHVPF SFGVEHQVRH LKEPNLLPKR CLFSRETELS AGNSFANVLG YFGTVEKEDI  300
ACTGQESGVL NELLGTESLR NELIGLRTGT LRNELTKTEC LNNELMKTES LKNESSNGSD  360
NFHSLQLQNG MHLPFSLGVE QVQQFSWIQN DNNQHMASPK ESNLFPRRGT ELLAGNSFGN  420
YSGYFGTTEK PDIASIGQAS GVLSELLRTE SLMNELIGLK SETLRNNLTQ NESLMNDLIK  480
TESSSNKLIK SEFLTNELIK TEHLMNELIK TESLRKELIK AEPMRNELMN SKSLRNELIN  540
TKSLRLQLYG QDSYPPFNFS ILPDNKFQPA QQTNLQQSID DYCAEGNFEQ PQSGYDSMHC  600
NCASTSGPSS IATFDEYLYP QQHYSPDGHV S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	6e-65	M-type_MADS family protein