PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121542.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-PHD

Protein Properties

Length: 504aa MW: 55819.6 Da PI: 4.3991

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.5	2.2e-13	396	443	7	54
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 + + ++ L + F++n+yp+++++e+LA++lg+t qV+ WF N R k XP_028121542.1 396 PGEAVTQGLIKSFNENHYPDQSMKEKLAMELGVTVHQVSKWFENARWK 443 5667789999************************************87 PP
2	PHD	40	8.9e-14	32	87	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ s ++++++lCdg C++ fH+ Cl+++l +e +p g wlC+ C++k XP_028121542.1 32 FCAKCGSrdSPADNDIILCDGaCERGFHQFCLEPPLLKEAIPPGdeGWLCPGCDCK 87 699**76667****66****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MDEHIRAGDS SHIKFISSSI VCGSHGLTNL IFCAKCGSRD SPADNDIILC DGACERGFHQ 60 FCLEPPLLKE AIPPGDEGWL CPGCDCKVDC INLLNDFQGT NVSILDTWEK VFPEVAVVNK 120 RFDRVGLGFM SDDSEDNDYD PDASELDEKV EGDESSSDES DFYSASEDFG PSPNNKQNLE 180 HSSDDSEDDD YDPTALDLDE QVKQETSSSD FTSDSEDFSV AFEDELMSAL SDHTEPFGGS 240 DGERSKVIRR KKQSLNTELL SLMESSPSQG DSAPVTGKRH VERLDYEKLY DEAYGNDSCD 300 SSDEDWIDAG DIPNKRRKNN TKKVASAFPS GRTPIIEGTN AKDMQHNQEQ SEHTPTRRAL 360 KNLDVEGTYN SPAKSHKGFS ECGSRDSTTK RSCRRPGEAV TQGLIKSFNE NHYPDQSMKE 420 KLAMELGVTV HQVSKWFENA RWKFYHPSPQ TNISEPGPKM VTENISCNGL SMGNSLTEES 480 SGQRSTTPGG HKRKSQSYDH QGSE

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MDEHIRAGDS SHIKFISSSI VCGSHGLTNL IFCAKCGSRD SPADNDIILC DGACERGFHQ  60
FCLEPPLLKE AIPPGDEGWL CPGCDCKVDC INLLNDFQGT NVSILDTWEK VFPEVAVVNK  120
RFDRVGLGFM SDDSEDNDYD PDASELDEKV EGDESSSDES DFYSASEDFG PSPNNKQNLE  180
HSSDDSEDDD YDPTALDLDE QVKQETSSSD FTSDSEDFSV AFEDELMSAL SDHTEPFGGS  240
DGERSKVIRR KKQSLNTELL SLMESSPSQG DSAPVTGKRH VERLDYEKLY DEAYGNDSCD  300
SSDEDWIDAG DIPNKRRKNN TKKVASAFPS GRTPIIEGTN AKDMQHNQEQ SEHTPTRRAL  360
KNLDVEGTYN SPAKSHKGFS ECGSRDSTTK RSCRRPGEAV TQGLIKSFNE NHYPDQSMKE  420
KLAMELGVTV HQVSKWFENA RWKFYHPSPQ TNISEPGPKM VTENISCNGL SMGNSLTEES  480
SGQRSTTPGG HKRKSQSYDH QGSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-41	HB-PHD family protein