PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028121212.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 573aa    MW: 64575.6 Da    PI: 4.6271
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028121212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.71.2e-1312045722373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA ++s+g+ e+a+++++ l+++ s +g+p qR+aay++eALaar+a s+++lykal+++e +   s ++l+a+++++ev+P+++f+++
  XP_028121212.1 204 KQLLYDCAVMISEGNIEEASTTINDLRQRFSIQGEPSQRIAAYMVEALAARVATSGTGLYKALKCKEPP---SNDQLSAMQVLFEVCPYFRFGFM 295
                     589*****************************************************************9...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI e++++e+rv iiDfdi+qG Q+++L+q++a+++++ p+lR+Tgv++p+s+   +  l+ +g+rL+++Ae+l+vpfef++ va +++ +
  XP_028121212.1 296 AANGAIIESFKNEKRVQIIDFDIGQGSQYITLIQTIANQRGKLPHLRLTGVDDPQSVqrANGGLKVIGQRLKQLAESLDVPFEFEA-VAAKTAVV 389
                     *******************************************************99888999***********************.7999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++ +L+++ gEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq+++ n+++Fl rf+ea +yysa+f sl+a+lpr+s+er +
  XP_028121212.1 390 SPVMLNCQAGEALIVNFAFQLHHMPDESVSTINQRDRLLRMVKSLNPKLVTVVEQDMNANTAPFLPRFVEAHNYYSAVFQSLDATLPRDSQERLN 484
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+reivn+vaceg+er+er e ++kW++r+++aGF + p+s +++++++ l++++ ++ y+v+ee g+l +gW+d+ L+++SaW
  XP_028121212.1 485 VEKQCLAREIVNIVACEGEERIERYEVAGKWKARMMMAGFVSTPISPNVNETIRGLIKQYCDR-YKVKEETGALHFGWEDKILIVASAW 572
                     *************************************************************66.************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MSLVRTQDQY SRSYGNLKLY ALNGSSDTSG IPSPIFNSDK HKIMYATESY DSECCDPNFF  60
LDSPMEEFIH PSISSHSVNQ LHSMTMQNPF NYFDTTRHED RYQPNFESEY FESHSPDDID  120
YNEDKMRLKL QELERALLDD NDDEDDDAFG PNQSMEIDCE WSNPIGDALL LHDSPKESSS  180
LDSILSSISS NKEVSLTSSP QTPKQLLYDC AVMISEGNIE EASTTINDLR QRFSIQGEPS  240
QRIAAYMVEA LAARVATSGT GLYKALKCKE PPSNDQLSAM QVLFEVCPYF RFGFMAANGA  300
IIESFKNEKR VQIIDFDIGQ GSQYITLIQT IANQRGKLPH LRLTGVDDPQ SVQRANGGLK  360
VIGQRLKQLA ESLDVPFEFE AVAAKTAVVS PVMLNCQAGE ALIVNFAFQL HHMPDESVST  420
INQRDRLLRM VKSLNPKLVT VVEQDMNANT APFLPRFVEA HNYYSAVFQS LDATLPRDSQ  480
ERLNVEKQCL AREIVNIVAC EGEERIERYE VAGKWKARMM MAGFVSTPIS PNVNETIRGL  540
IKQYCDRYKV KEETGALHFG WEDKILIVAS AWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein