PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028120836.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23275.3 Da PI: 8.4286 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.1 | 4.2e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+ ++ p++q++++ +v+k+FG++ ++++++++p ++r+d+++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_028120836.1 2 SCNGCRVLRKGCSENCILRSCLqsidsPDSQAHATLFVAKFFGRAGLMSFISSVPSNQRPDLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6*********************9999999****************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_028120836.1 97 AVQTVLR 103 *998776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MSCNGCRVLR KGCSENCILR SCLQSIDSPD SQAHATLFVA KFFGRAGLMS FISSVPSNQR 60 PDLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVQT VLRGGTLRPI PEFLADETSE 120 AEVTCTDMFK LNQDPEPKSR SNDQLGNLRL SLTPCSSSRG GGSGGALNFQ SSPKKRRPGT 180 PSMNSEESVT TTCFQSGGFR DAFAQRGGGG KLLNLFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-74 | LBD family protein |