PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028120773.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 582aa MW: 63292.4 Da PI: 7.2772

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028120773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.7e-24	224	268	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_028120773.1 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 268 79****************************************985 PP
2	QLQ	59.8	8e-21	154	190	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+ +yKy+ an+P+P++Ll++i+k XP_028120773.1 154 GPFTPSQWMELEQQAFIYKYITANVPIPSNLLFPIRK 190 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MDLGAGGMLM VGLEDGFVGG GSDPYTSFSL DAPPHTNKQK LYGSWLLNKQ ERPEEEDDWR 60 SSCLKVAKTT TSEDDFSASK AALLRSPLLR SNGSDGQQML SFSSPTSQAV PLPYFQYQHH 120 SSIPTTTYGR DTTGYGCGGM NGADMHGGLT VVRGPFTPSQ WMELEQQAFI YKYITANVPI 180 PSNLLFPIRK ALDSAGFSGF SGGHIVPTTF GWGAFRLGFS NTTDPEPGRC RRTDGKKWRC 240 SRDAVADQKY CERHMNRGRH RSRKPVEGQT GHSVSGPTTT SKLMPMASST TASVVPDSLC 300 CHPQLKNLQP GAANDRLFLN KENVGERSQA ATDLCMLSPA IGLKENQYCI PKQQQNPYGE 360 SSRSEFGLVC SDSLLNPLHK NSSHISCRNY GSSQDLNDRE NGSQHSVVRQ FMDDWPKNHT 420 DHHHRSAVSW PNVDLQTDRT QLSISIPVAA SSDPSNEKLA LSPLRLSREL EMGLGVGSVV 480 SEPNQKQVNW IPISWENSLG GPLGEVLHST NNSSGGDCKS SSALNLMTGG WDTNPIPQLA 540 SSPTGVLQKM TFRSLSNSSA GSSPRADNHK THEENSSLLP AS

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MDLGAGGMLM VGLEDGFVGG GSDPYTSFSL DAPPHTNKQK LYGSWLLNKQ ERPEEEDDWR  60
SSCLKVAKTT TSEDDFSASK AALLRSPLLR SNGSDGQQML SFSSPTSQAV PLPYFQYQHH  120
SSIPTTTYGR DTTGYGCGGM NGADMHGGLT VVRGPFTPSQ WMELEQQAFI YKYITANVPI  180
PSNLLFPIRK ALDSAGFSGF SGGHIVPTTF GWGAFRLGFS NTTDPEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHMNRGRH RSRKPVEGQT GHSVSGPTTT SKLMPMASST TASVVPDSLC  300
CHPQLKNLQP GAANDRLFLN KENVGERSQA ATDLCMLSPA IGLKENQYCI PKQQQNPYGE  360
SSRSEFGLVC SDSLLNPLHK NSSHISCRNY GSSQDLNDRE NGSQHSVVRQ FMDDWPKNHT  420
DHHHRSAVSW PNVDLQTDRT QLSISIPVAA SSDPSNEKLA LSPLRLSREL EMGLGVGSVV  480
SEPNQKQVNW IPISWENSLG GPLGEVLHST NNSSGGDCKS SSALNLMTGG WDTNPIPQLA  540
SSPTGVLQKM TFRSLSNSSA GSSPRADNHK THEENSSLLP AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-106	GRF family protein