PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028120431.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 413aa MW: 45980.9 Da PI: 6.1183

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028120431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22	4.3e-07	191	212	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H XP_028120431.1 191 FCDICGKGFKRDANLRMHMRAH 212 6*******************99 PP
2	zf-C2H2	12.1	0.00061	277	300	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + XP_028120431.1 277 YSCNRCNkKSFSVLADLKSHLKHC 300 99*******************977 PP
3	zf-C2H2	11.6	0.00084	308	324	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ XP_028120431.1 308 SCGTSFSRKDKLFGHMA 324 5**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MSNSGDFYHI PSTSQPPPRP PGHDLRHYTP GAAADPRVPL LNLATVRSRM DSLQRFLSES 60 VKNNTLIGQN QMDMVSTEIS SAINQIIVNG AALLACTQRP SLPPPTDHTS PNPIGSENPS 120 SIINAGPDLK VSENLSSFDV KTSMDAMIMS EEKSVMNLKV EDEEMKDEIG IDDWEIIELD 180 AVELLAEHIH FCDICGKGFK RDANLRMHMR AHGNQFKTPE ALAKPERCSS EFSRRKTRFS 240 CPFVGCNRNK SHKKFRPLKS AICVKNHFKR SHCPKMYSCN RCNKKSFSVL ADLKSHLKHC 300 GESKWKCSCG TSFSRKDKLF GHMALFEGHM PAVVEEDEKP KEASAAAAAM VEDDEEDDDR 360 MVKEAETGAN CGDNGFFDGL LDGFDSIEDY CFQDVLESPN GLGTTAMNQF YNF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MSNSGDFYHI PSTSQPPPRP PGHDLRHYTP GAAADPRVPL LNLATVRSRM DSLQRFLSES  60
VKNNTLIGQN QMDMVSTEIS SAINQIIVNG AALLACTQRP SLPPPTDHTS PNPIGSENPS  120
SIINAGPDLK VSENLSSFDV KTSMDAMIMS EEKSVMNLKV EDEEMKDEIG IDDWEIIELD  180
AVELLAEHIH FCDICGKGFK RDANLRMHMR AHGNQFKTPE ALAKPERCSS EFSRRKTRFS  240
CPFVGCNRNK SHKKFRPLKS AICVKNHFKR SHCPKMYSCN RCNKKSFSVL ADLKSHLKHC  300
GESKWKCSCG TSFSRKDKLF GHMALFEGHM PAVVEEDEKP KEASAAAAAM VEDDEEDDDR  360
MVKEAETGAN CGDNGFFDGL LDGFDSIEDY CFQDVLESPN GLGTTAMNQF YNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-78	C2H2 family protein