PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028120342.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 580aa MW: 62903.8 Da PI: 7.929

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028120342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.5	4.7e-23	223	266	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_028120342.1 223 DTEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVE 266 689**************************************987 PP
2	QLQ	62.1	1.5e-21	153	189	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k XP_028120342.1 153 GPFTPSQWMELEQQALIYKYITANVPIPSNLLIPIRK 189 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MDLGVGGMLM VGLEDGFVGG GSDPYTSFSS DAPPHTNKQK LYGSWLLNKQ ERPEEEDDWR 60 SSCLKVAKTT TSEDDFSASK AALLRSPLLR SNSSDGQQIL SFSSPNSQAV PLPYFQYQHH 120 SSITTTYGRD TTGYGCGGMN GANMRGGLTV VRGPFTPSQW MELEQQALIY KYITANVPIP 180 SNLLIPIRKA LDSAGFSGFS GGHIVPTTFG WGAFRLGFSN TTDTEPGRCR RTDGKKWRCS 240 RDAVADQKYC ERHMNRGRHR SRKPVECQTG HSVSGPTTAT TTSKLMPMAS STTASGVPDS 300 LSRHPQLKNL QPGAANDRLF LNKENVGERS QAATDLCMLS PAIGLKENQY CIPKQQQNPY 360 GESSRSEFGL VCSDSLLNPL HKNSSHISCR NYGSSQDLND RENGSQRSVV RQFMDDWPKN 420 HTDHHHRSAV SWPNVDLQAD RTQLSISIPV AASSDPSNEK LALSSRELEM GLGVGSVVSE 480 PNQRQVNWIP ISWENSLGGP LGEVLHSTNN SSGGDCKSSS ALNLMTGGWD TNPSAQLASS 540 PTGVLQKMTF RSLSNSSAGS SPRADNHKTH EGNSSLLPAS

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MDLGVGGMLM VGLEDGFVGG GSDPYTSFSS DAPPHTNKQK LYGSWLLNKQ ERPEEEDDWR  60
SSCLKVAKTT TSEDDFSASK AALLRSPLLR SNSSDGQQIL SFSSPNSQAV PLPYFQYQHH  120
SSITTTYGRD TTGYGCGGMN GANMRGGLTV VRGPFTPSQW MELEQQALIY KYITANVPIP  180
SNLLIPIRKA LDSAGFSGFS GGHIVPTTFG WGAFRLGFSN TTDTEPGRCR RTDGKKWRCS  240
RDAVADQKYC ERHMNRGRHR SRKPVECQTG HSVSGPTTAT TTSKLMPMAS STTASGVPDS  300
LSRHPQLKNL QPGAANDRLF LNKENVGERS QAATDLCMLS PAIGLKENQY CIPKQQQNPY  360
GESSRSEFGL VCSDSLLNPL HKNSSHISCR NYGSSQDLND RENGSQRSVV RQFMDDWPKN  420
HTDHHHRSAV SWPNVDLQAD RTQLSISIPV AASSDPSNEK LALSSRELEM GLGVGSVVSE  480
PNQRQVNWIP ISWENSLGGP LGEVLHSTNN SSGGDCKSSS ALNLMTGGWD TNPSAQLASS  540
PTGVLQKMTF RSLSNSSAGS SPRADNHKTH EGNSSLLPAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	9e-94	GRF family protein