PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028120073.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 283aa MW: 30977.6 Da PI: 6.2546

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028120073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.6	2.5e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q XP_028120073.1 4 SCNGCRVLRKGCSDNCSIRPCLqwiksPESQANATVFLAKFYGRAGLINLVNAGPEHLRPAIFRSLLYEACGRVVNPIYGSVGLLWSGSWSLCQN 98 6********************************************************************************************** PP DUF260 91 kaelallk 98 ++e +l + XP_028120073.1 99 AVESVLKG 106 *9988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MRISCNGCRV LRKGCSDNCS IRPCLQWIKS PESQANATVF LAKFYGRAGL INLVNAGPEH 60 LRPAIFRSLL YEACGRVVNP IYGSVGLLWS GSWSLCQNAV ESVLKGDPIT QIASEAAESN 120 NGPPLKVYDF RHVSKDDNSA GSNDVHRVRN RCRFKKSGAV VKPKACLVNV VPGGELNRST 180 SHESSLSHLS QAAAAAAANV DGESREVEES LDTAEPDESI LKTNDSSGDG EIELELTLGF 240 EPVSRYHSVS QERNEESRRR ESSDDRMELE LDYPVRPTTR LVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	7e-80	LBD family protein