PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028120030.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 318aa    MW: 36003.3 Da    PI: 6.6433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028120030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.73.7e-201663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d+v+++G g+W++ +++ g++R++k+c++rw +yl
   XP_028120030.1 16 KGPWTPEEDEKLLDYVQLHGHGSWRALPKRAGLNRCGKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding57.33.7e-1869114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE++++++++  lG++ W++Ia++++ gRt++++k++w+++l
   XP_028120030.1  69 RGKYSDEEEQIIINLHSVLGNK-WSKIASHLP-GRTDNEIKNHWNTHL 114
                      899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MVRAPCCDEN SGLIKKGPWT PEEDEKLLDY VQLHGHGSWR ALPKRAGLNR CGKSCRLRWT  60
NYLRPDIKRG KYSDEEEQII INLHSVLGNK WSKIASHLPG RTDNEIKNHW NTHLRKKLLQ  120
RGIDPQTHKP ISDLNLLANL AHLLYASNLT NLMNPWDNNN AFRQHSDATT QLVKIQLLQT  180
MMQVINTTTP LPNIAQTQTS LSGHYNNNNT TIPQQAPLEF PNLDVNVNSQ QQFNDFADID  240
KAIAWFGDGF QPQVVGANCN NMNSDCHTQS SESALPSINQ VESKIGPTYA SSQSPTSNIF  300
EAWEKFLDDE GHSWEDIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-81MYB family protein