PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028119580.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 536aa MW: 58050 Da PI: 8.5521

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028119580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028119580.1 94 FVCEICKKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	11.1	0.0013	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_028119580.1 170 WKCDKCSKKYAVRSDWKAHSKTC 192 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MKALMIQQQN PGVDENNMSN LTSASGEASV SSGNKDESGT IYPPQQYFAP PPPPQNQTQP 60 ALVVKKKRNL PGNPDPEAEV IALSPKSLLA TNRFVCEICK KGFQRDQNLQ LHRRGHNLPW 120 KLKQRTSKEV KKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA 180 VRSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIT VNPLLSSTQL 240 STSTSSSHIN LQVQIQPQFN YQDLHDFPMK KEQQSFSLRP DISVPPRLAC PSTVVGAGPG 300 PPPPSSIFPT ILDQEFTHHQ DHQLPVLHEN SNPNPSLGPT TLQPYHETAS SSSPHMSATA 360 LLQKAAQMGA TMSSKANAMM MSMRPHHHQH HQAHVSANSG GGFGLNLSSR EEMAGTATDP 420 GAGAGAPPSF LQDMMMTTSL SSTATGFDGS SFEYSFGDHG GAGGVGMLNP NKDGTISKAS 480 GGGNGGHGGG GNDGMTRDFL GLRPLSHDDI LNIAGFTNHI DSPMGNQNQT QESWRS

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MKALMIQQQN PGVDENNMSN LTSASGEASV SSGNKDESGT IYPPQQYFAP PPPPQNQTQP  60
ALVVKKKRNL PGNPDPEAEV IALSPKSLLA TNRFVCEICK KGFQRDQNLQ LHRRGHNLPW  120
KLKQRTSKEV KKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA  180
VRSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIT VNPLLSSTQL  240
STSTSSSHIN LQVQIQPQFN YQDLHDFPMK KEQQSFSLRP DISVPPRLAC PSTVVGAGPG  300
PPPPSSIFPT ILDQEFTHHQ DHQLPVLHEN SNPNPSLGPT TLQPYHETAS SSSPHMSATA  360
LLQKAAQMGA TMSSKANAMM MSMRPHHHQH HQAHVSANSG GGFGLNLSSR EEMAGTATDP  420
GAGAGAPPSF LQDMMMTTSL SSTATGFDGS SFEYSFGDHG GAGGVGMLNP NKDGTISKAS  480
GGGNGGHGGG GNDGMTRDFL GLRPLSHDDI LNIAGFTNHI DSPMGNQNQT QESWRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-103	C2H2 family protein