PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118902.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 571aa MW: 61470.8 Da PI: 6.8164

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.1	1.3e-22	224	267	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+v + +k+CErH h+ r rsrk++e XP_028118902.1 224 DPEPWRCRRTDGKKWRCSRDVAPYQKYCERHAHKTRPRSRKPVE 267 79***************************************987 PP
2	QLQ	49.9	9.6e-18	163	198	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q q+L++Q +yKy++a+ PvPpeLl++i+k XP_028118902.1 163 PFTASQRQELERQTNIYKYIMASIPVPPELLLPITK 198 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MGGVVKMGNG NTSGLEDGTE KSASASASGC DVGLGLRMQH TESFPSRTMM ETPHPPLPYH 60 HLNAAASLSD SMGGVGFGGD GGSSGSGSGG PIYYNLSNNN QLACLSDIYD VVGDASVSGG 120 AAAALVVPRT FHPFASDSFF KSSSSGRGGG GGGGGMEAPA KVPFTASQRQ ELERQTNIYK 180 YIMASIPVPP ELLLPITKSP SPLPSSHSQS NMSGLDLKFS RSSDPEPWRC RRTDGKKWRC 240 SRDVAPYQKY CERHAHKTRP RSRKPVELQP HNTQTNSNTT NTHPLVNLST TNKTAHPYQK 300 PIFHIPTLLS GATHAQPRCT EWFMKGDPIP SGNLNQQWQH LMQSSSSGEG GLKSYNEDEH 360 NNRNVSVFQQ HYEEEQQRQQ SMNANSYIDM EDGQRFQNKP PNEHCSSSLL GGLLNTNQTQ 420 TTTSTTTRRF IDAWSSAEGE EIDHEISKCS VPSTRRNLPL SSLTLSMSGA DNRIEESAND 480 QMGVSGMMRD LERESESGDG GFKSQWLLNP VPWMGSPPGG PLGEALCLGI ASTAKAASNV 540 PSPHDYSTTT TTTSSCSKSS CDDSGHGLHF H

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MGGVVKMGNG NTSGLEDGTE KSASASASGC DVGLGLRMQH TESFPSRTMM ETPHPPLPYH  60
HLNAAASLSD SMGGVGFGGD GGSSGSGSGG PIYYNLSNNN QLACLSDIYD VVGDASVSGG  120
AAAALVVPRT FHPFASDSFF KSSSSGRGGG GGGGGMEAPA KVPFTASQRQ ELERQTNIYK  180
YIMASIPVPP ELLLPITKSP SPLPSSHSQS NMSGLDLKFS RSSDPEPWRC RRTDGKKWRC  240
SRDVAPYQKY CERHAHKTRP RSRKPVELQP HNTQTNSNTT NTHPLVNLST TNKTAHPYQK  300
PIFHIPTLLS GATHAQPRCT EWFMKGDPIP SGNLNQQWQH LMQSSSSGEG GLKSYNEDEH  360
NNRNVSVFQQ HYEEEQQRQQ SMNANSYIDM EDGQRFQNKP PNEHCSSSLL GGLLNTNQTQ  420
TTTSTTTRRF IDAWSSAEGE EIDHEISKCS VPSTRRNLPL SSLTLSMSGA DNRIEESAND  480
QMGVSGMMRD LERESESGDG GFKSQWLLNP VPWMGSPPGG PLGEALCLGI ASTAKAASNV  540
PSPHDYSTTT TTTSSCSKSS CDDSGHGLHF H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-32	GRF family protein