PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028118701.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 172aa    MW: 18890 Da    PI: 5.6846
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028118701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.51.2e-4310108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+
  XP_028118701.1  10 PCAACKFLRRKCLPGCIFAPYFPPEEPHKFSNVHKIFGASNVSKLLNEIAPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELD 104
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_028118701.1 105 ATNA 108
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MASSSYSNSP CAACKFLRRK CLPGCIFAPY FPPEEPHKFS NVHKIFGASN VSKLLNEIAP  60
HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL MRFTSNEQPT  120
TMPAFDFEYG RRMDQGGGAF DQSYGGFSYP YNSPWNNNPS GDSPEGGGDG SV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.23e-70LBD family protein