PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118636.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 241aa MW: 27144.6 Da PI: 6.2253

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.4	1.3e-55	74	177	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw++q ie++t+fknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_028118636.1 74 QLQSFWANQcqeIEQTTEFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 168 89****99999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_028118636.1 169 VDIVPREDL 177 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MDQQGHGQGQ PPVTGVMGSS SQMPYGVAPY QANQMTGPAA PVSVGSIHSP AQLAQQQLAY 60 QHIHQQQQQL LQQQLQSFWA NQCQEIEQTT EFKNHSLPLA RIKKIMKADE DVRMISAEAP 120 VVFARACEMF ILELTLRSWN HTEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPREDLKDE 180 VLASMPRGTV PVGGPNEGLP YYYMPPQHAS QAQQMWPQQP PHPYTTAQQM WPHQQQPPAD 240 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	1e-78	NF-YC family protein