PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118553.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 422aa MW: 47068.1 Da PI: 8.4001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_028118553.1 51 YVCEICNQGFQRDQNLQMHRRRH 73 9*********************9 PP
2	zf-C2H2	17.4	1.3e-05	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_028118553.1 130 WVCEKCSKAYAVQSDYKAHLKTC 152 58*******************98 PP
3	zf-C2H2	11	0.0013	160	178	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_028118553.1 160 DCGRVFSRVESFIEHQDTC 178 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MLDNNTGSVG PSSSSENGVA KKRKRRPAGT PDPDAEVVSL SPKTLLESDQ YVCEICNQGF 60 QRDQNLQMHR RRHKVPWKLV KREESVGEVK KRVFVCPEPS CLHHDPCHAL GDLVGIKKHF 120 RRKHSNNKQW VCEKCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDTCTL 180 RPALPELQAL QPSWSPRTAS SMTPTNDTNF SIAPILPRLA VPKPVGPVFL CPERHSSSNT 240 DDQQHNLELQ LLSSSSNAYA SALQICDENH ATNLKLSIGS CSQGEQNCTN LDAGRSYRPE 300 RNATETRLEA SRLKEEADEK LKLAMFEKAY AEEARIQAKK QIEMAELEFA NAKRIRQQAQ 360 AELERAQLLK EKATKKISST ILLITCHSCK QQFQATTTSI ARADETSLAA SYMSSATTTE 420 GD

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MLDNNTGSVG PSSSSENGVA KKRKRRPAGT PDPDAEVVSL SPKTLLESDQ YVCEICNQGF  60
QRDQNLQMHR RRHKVPWKLV KREESVGEVK KRVFVCPEPS CLHHDPCHAL GDLVGIKKHF  120
RRKHSNNKQW VCEKCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDTCTL  180
RPALPELQAL QPSWSPRTAS SMTPTNDTNF SIAPILPRLA VPKPVGPVFL CPERHSSSNT  240
DDQQHNLELQ LLSSSSNAYA SALQICDENH ATNLKLSIGS CSQGEQNCTN LDAGRSYRPE  300
RNATETRLEA SRLKEEADEK LKLAMFEKAY AEEARIQAKK QIEMAELEFA NAKRIRQQAQ  360
AELERAQLLK EKATKKISST ILLITCHSCK QQFQATTTSI ARADETSLAA SYMSSATTTE  420
GD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	26	KKRKRR
2	22	27	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-146	C2H2 family protein