PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118516.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 366aa MW: 42189.4 Da PI: 6.36

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.9	3.1e-19	64	142	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +e+++Li +rre++ +++++k++k+lW+++ mre g er+p+ C++kw+nl k+yk+ + g ++ + + fd+le XP_028118516.1 64 WVFEEIQCLIHLRREVNCQFNTAKSQKHLWDQIYVGMRENGWERTPQNCNDKWRNLLKEYKNSNGGIGSS------RQVCFDELE 142 999***********************************************************99998873......223566665 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MLDGTPQNKL DMFMASNSSP LTSLFNEAAN EMAIESENSS GFVPYHHLPM ILPENGPKRR 60 AETWVFEEIQ CLIHLRREVN CQFNTAKSQK HLWDQIYVGM RENGWERTPQ NCNDKWRNLL 120 KEYKNSNGGI GSSRQVCFDE LEEYCREKKS NGISKKLRDG SSVQILDKGT DEAGFLFGPS 180 EDNSLERTYH DADPLDIHEP EGIVPNEFPS WNWRGTPRRD EDVSGSGGRV ISVKYEESVK 240 RIGIDGSADA IKEAIKSAFR LRTKRSFWLE DEAGIIRALD RNMPLRNYTL HLDDGLRIRI 300 CLFEDPNHLH CRVIEKAFFN EDVFNSYLNN CGWIGLKELR SRKNVDSMNE LRAGEVYHGQ 360 RRVLKN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MLDGTPQNKL DMFMASNSSP LTSLFNEAAN EMAIESENSS GFVPYHHLPM ILPENGPKRR  60
AETWVFEEIQ CLIHLRREVN CQFNTAKSQK HLWDQIYVGM RENGWERTPQ NCNDKWRNLL  120
KEYKNSNGGI GSSRQVCFDE LEEYCREKKS NGISKKLRDG SSVQILDKGT DEAGFLFGPS  180
EDNSLERTYH DADPLDIHEP EGIVPNEFPS WNWRGTPRRD EDVSGSGGRV ISVKYEESVK  240
RIGIDGSADA IKEAIKSAFR LRTKRSFWLE DEAGIIRALD RNMPLRNYTL HLDDGLRIRI  300
CLFEDPNHLH CRVIEKAFFN EDVFNSYLNN CGWIGLKELR SRKNVDSMNE LRAGEVYHGQ  360
RRVLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	3e-88	Trihelix family protein