PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028118478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | HB-PHD | ||||||||
Protein Properties | Length: 1483aa MW: 162995 Da PI: 4.6582 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.8 | 3.2e-12 | 1313 | 1360 | 9 | 56 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++ L ++F++n+yp+++++e L k+lg+t qV+ WF N R ++ XP_028118478.1 1313 EAVTQGLLRAFKENQYPDRTAKENLGKELGITAHQVSKWFENARWSYR 1360 56788999************************************9887 PP | |||||||
2 | PHD | 38 | 3.8e-13 | 939 | 994 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k XP_028118478.1 939 FCAKCGSkdLGADNDIILCDGaCERGFHQFCLEPPLLKEDIPPDdkGWLCPGCDCK 994 699***976667********66*******************99999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1483 aa Download sequence |
MSADMNMDAS SAQDNSETGQ GSPPIQRTSI QEHEFGARSL ASEATEEKHV ISTGNVNMVS 60 TEARPAECNY NGIERLRQPH EDLTRNLSCE QLGQPLEDAT MNSNSEQFGL LPDHVAGKNL 120 SALRAMSEIN YELVTENVNS EALVETQKMG IGHIQNGPAE TGTVEFDHLG LEQSILPSKD 180 VTKNSSWDQL RPTPEDERKS SLEQLGLPPK DAAVNTSLEQ LKPPPDHAAG KKSSAAQARS 240 EINHELIPEN VNSEALVETK KICTGRIQNV PVETETVELD HLGLEQSSLP SEDVTKNSSW 300 DQLRPSPQDG RNSSLEQLGL PPKDAAVNTS PEQLKSPPDH AAGKILSARQ TMPEINHEEV 360 PENVNSEALV ETQNIGTGCI QNGPAETEMV EFDHLGLELC GLPSEDVTEN SSRDQLRPPP 420 EDKRKSTLEQ SELVPENVDS EALVETQKIG TGCIQNGPAE TGMAEFNHLG LELSGLTSEN 480 VTENSSGDQL RLPPEDERKS TLEQSGLPPK DTAVNTSLEE LKTPPDNTAG KILNAKQAMP 540 EINHVLVPEN VNSEALVVTQ KVGTGHIQGE PTETGMVEFD HLGLELSDLP SEDMTRSSSW 600 EQLCPSPEDK RKSSMEQLGL PPEDAAVNAN LEQLKPLPDH AAGKILSAKQ AMPEINHVLV 660 PENENIEALV VTRKVCTGHI QNGPTETGRV EFNHLGLQQS GLPSEDVTKS SSSEQLRPPL 720 EDEKNSSMEQ LGLPPEDAAV NTSLEQLEPL PDNVSNNCDL KQLEKQPEDA ANNASKLGGR 780 GRRKSTKSTK HEPGSSVMST RVLRSRLQEK HKAPEPSNNL PEHVDGANQE KRRKMRKKKN 840 MKKIPVDEVS RIRKHLRYLL NRINYEQNLI DAYSGEGWKG QSLEKIKPEK ELQRAKSEIF 900 RCKLKIRDLF QRLDLLIAEG RLPESLFDSE GQIDSEDIFC AKCGSKDLGA DNDIILCDGA 960 CERGFHQFCL EPPLLKEDIP PDDKGWLCPG CDCKVDCIDL LNDSQGTVLS VLDTWEKVFP 1020 EAAAAAAAGN KLDSVGLPSD DSDDNDYDPD GSEVDEEVEG DESSSDESDS YSASEDNRDS 1080 PKNKQKLELP SDDSEDDDYD PDAPDLSDQV KQESSSSDFT SDSEDFSVAF DDNISPCKDE 1140 PVPGELMSAS SDQNKPCGVS NGERSKVGRR KKQSLDDELP YLLESGPGQG ESAPLSGKRH 1200 VERLDYKRLH DETYGNVSSD SSDENWMDAS DVPTKRRKNN TGKVASASPC GRTPIIEGKH 1260 NQEESERTPK RRACKKLDVE GINDSPAKSY KGSSEPGSSY SGSKRTPYKR LGEAVTQGLL 1320 RAFKENQYPD RTAKENLGKE LGITAHQVSK WFENARWSYR HTSRMASSLE SVPMSEPEPK 1380 MVREDDAGNG VKNKEPSKVD AGLAYTTPRG HKRISQSEHQ ASSDHMLSIE ETQNPSAPVD 1440 LPKSQEVRKR SRPPKARVQK RGRPLRSQEV RKRGRPKRKK SAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 9e-92 | HB-PHD family protein |