PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117639.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 364aa MW: 42350.2 Da PI: 7.7919

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.8e-27	25	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+Y+ ++GFs+r+++ kk k +++ ++r +vC+keg+r+ +k++ ++++raetrtgC+a+l +k+++ +gk++vt+++++HnH+l+ XP_028117639.1 25 EFYNTYGGRMGFSIRRDYCKKDKFTNQLIHRLLVCNKEGFRKVDKRD-PLSKNSRAETRTGCEARLYIKLHEgNGKYVVTDFKEKHNHDLV 114 6*****************************************999.9999***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEPENDCDWK PKLGMIFDSE QCAYEFYNTY GGRMGFSIRR DYCKKDKFTN QLIHRLLVCN 60 KEGFRKVDKR DPLSKNSRAE TRTGCEARLY IKLHEGNGKY VVTDFKEKHN HDLVSPECAH 120 MLPSQRKIST TQAIQLDLAT QSGLRLDQSF ELMGREAGGR QYLGFTKLDS KNYLRTKRQQ 180 SLAYGEVGNV LQYFKEKSLQ NPSFFYAVQL DNEEQITNMF WADAQMIMDY AQFGDIVTFD 240 TTYKLNKEHR PFASFVGFNH HRETVIFGAA LLYDETAESF VWLFQNFLEA MSRKAPKTLF 300 TDQDAAMAKA IPIVMPDTSH RLCTWHLMQN ALKHVNCLFQ DKGAKGVLNK FLFDIENENQ 360 WKLE

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEPENDCDWK PKLGMIFDSE QCAYEFYNTY GGRMGFSIRR DYCKKDKFTN QLIHRLLVCN  60
KEGFRKVDKR DPLSKNSRAE TRTGCEARLY IKLHEGNGKY VVTDFKEKHN HDLVSPECAH  120
MLPSQRKIST TQAIQLDLAT QSGLRLDQSF ELMGREAGGR QYLGFTKLDS KNYLRTKRQQ  180
SLAYGEVGNV LQYFKEKSLQ NPSFFYAVQL DNEEQITNMF WADAQMIMDY AQFGDIVTFD  240
TTYKLNKEHR PFASFVGFNH HRETVIFGAA LLYDETAESF VWLFQNFLEA MSRKAPKTLF  300
TDQDAAMAKA IPIVMPDTSH RLCTWHLMQN ALKHVNCLFQ DKGAKGVLNK FLFDIENENQ  360
WKLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-85	FAR1 family protein