PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028117483.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 356aa    MW: 40926.5 Da    PI: 7.2032
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028117483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.21.1e-23953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e++snrqvt+skRrngilKKA+ELS+LCd++  +++fs+tgk
  XP_028117483.1  9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDLILLMFSPTGK 53
                    689****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDLILLMFSP TGKPTLFRGE  60
RSNIEEVIAK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIQDFLGSS SQSVEELSNQ  120
VRMLQAQLTE MHKRLSCWSN PDKIDNIEHL RQMEDSLRES LNRIQIQKEN FAKHPLMSLE  180
CTSQFQNGMH LPLMMGGMQE APLSWLPDNE NQHMLLTGDP NFLPQRDVEC STDHSLPTYS  240
GYFGPGKAEI ENTRHVDNPR QEGGALHGLD STACLRLQLN EQYSYHPYSG LDLQEAKKLR  300
PETEMNLHGN PLDYQINSNF QLSRPIYDNM HHAWVPPPEP CSISMFNGNS YSQQPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-110M-type_MADS family protein