PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117326.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 194aa MW: 21891.8 Da PI: 7.9612

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.7	5.4e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ XP_028117326.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	18.5	8.6e-08	83	115	66	98
K-box 66 RskKnellleqieelqkkekelqeenkaLrkkl 98 R++++++++eq+eel++ke++l + nk+L+ k+ XP_028117326.1 83 RETQTQIMVEQMEELRQKERQLGDMNKQLKIKV 115 99***************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GMTKTLERYQ HCNFNPHDNS VERETQTQIM VEQMEELRQK ERQLGDMNKQ LKIKVSLELS 120 SLQTEGQGLG PLPCSWNPTN ASTGNTSFSV HPSQPNPMDC DNETVLQIGY QHYVAGESSV 180 PRTMAGDIVQ GWVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	2e-64	MIKC_MADS family protein