PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028117321.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28210 Da    PI: 8.8819
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028117321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-32958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  XP_028117321.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                    79**********************************************95 PP

2K-box102.55.5e-3480169998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       e++++s++qe++kL+++ e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+eel++ke++l + nk+L+ k+
  XP_028117321.1  80 SVERETQSWYQEVSKLRAKFESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQTRQRKTQIMVEQMEELRQKERQLGDMNKQLKIKV 169
                     457789********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GMTKTLERYQ HCNFNPHDNS VERETQSWYQ EVSKLRAKFE SLQRTQRHLL GEDLGPLSVK  120
ELQNLEKQLE GALAQTRQRK TQIMVEQMEE LRQKERQLGD MNKQLKIKVS LELSSLQTEG  180
QGLGPLPCSW NPTNASTGNT SFSVHPSQPN PMDCDNETVL QIGYQHYVAG ESSVPRTMAG  240
DIVQGWVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-107MIKC_MADS family protein