PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116874.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 384aa MW: 43550.8 Da PI: 5.6855

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.3	8e-21	93	187	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHel 89 +fYn+YAk GFs+rks+ +++ ++g++++r + Cs+eg+r ++ + +ek+r ++a tr+gCk +++++ + gk++vt++ +HnHel XP_028116874.1 93 DFYNAYAKAKGFSIRKSRFNTN-KEGKVVSRLWLCSREGQRLPKYLDcvAEKSRAPKALTRVGCKVQFRIRYDAdageGGKYVVTHFIVDHNHEL 186 6***************9999.666699999*******99998899999*************987677789************9 PP FAR1 90 a 90 a XP_028116874.1 187 A 187 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MSMAPAEVKR EGDDYDIPNE ADDIRLTNES RAEPDHGCEA GPSNEEATNM NVEDGGADVK 60 KEMVDDAHRN DMVGDVERAI LEQKFDSVED GEDFYNAYAK AKGFSIRKSR FNTNKEGKVV 120 SRLWLCSREG QRLPKYLDCV AEKSRAPKAL TRVGCKVQFR IRYDADAGEG GKYVVTHFIV 180 DHNHELAEQH CVMYLRSHRS LNSADKAQAM AMRNVDVKTS QIMDYMVNQS GSYENVGFIR 240 TDLHNHIQAE RKAEVEDGDA QGALVYLCAK LDVDARFFLQ AQVKLLCGSI HGNDRAVTEL 300 HEVVAELADH GVWEFYSYKG QNVCRERGHE QQPQLTFYIV TSVHSSKEVF IHFRHLNQYH 360 NCLIFFLNLS TLNYCFVVVD IGPP

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MSMAPAEVKR EGDDYDIPNE ADDIRLTNES RAEPDHGCEA GPSNEEATNM NVEDGGADVK  60
KEMVDDAHRN DMVGDVERAI LEQKFDSVED GEDFYNAYAK AKGFSIRKSR FNTNKEGKVV  120
SRLWLCSREG QRLPKYLDCV AEKSRAPKAL TRVGCKVQFR IRYDADAGEG GKYVVTHFIV  180
DHNHELAEQH CVMYLRSHRS LNSADKAQAM AMRNVDVKTS QIMDYMVNQS GSYENVGFIR  240
TDLHNHIQAE RKAEVEDGDA QGALVYLCAK LDVDARFFLQ AQVKLLCGSI HGNDRAVTEL  300
HEVVAELADH GVWEFYSYKG QNVCRERGHE QQPQLTFYIV TSVHSSKEVF IHFRHLNQYH  360
NCLIFFLNLS TLNYCFVVVD IGPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-22	FAR1 family protein