PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116395.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 419aa MW: 46552 Da PI: 9.1929

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.4	2.2e-17	160	209	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f+ L++++P++ ++K +Ka+ L +++eYI++Lq XP_028116395.1 160 RSKHSATEQRRRCKINDRFQMLKDVIPHS----DQKRDKASFLLEVTEYIQYLQ 209 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MEFPQRRPLG TQGNYLKTHD FLQPLEGKNG GKEENTVEIT TAGKPPPPSL PPSGEQLILP 60 GGIGTHSMSH ISYFNQRVPK PEGDILVVAQ TSSTEGNEEN SNCSSYTGSD FTLREESALK 120 KGKTRKENIA GGRQVTTRGD DLMVKVVGGK STDQKPNNPR SKHSATEQRR RCKINDRFQM 180 LKDVIPHSDQ KRDKASFLLE VTEYIQYLQE KVHKYEGSYQ GWNQEPELMP WRNNHKPIEA 240 FVDQSQATDS GSGPALMLAA NFEENNINIF PTNPRNGQNT KEYKMKAIDQ NSEFTNMAVP 300 NVPLQSRSRA VDCAVTSKKQ KELEMSIESG TISISSVYSQ RLLNTLRQTL QNSGVDLSQA 360 SISVQIDLEK PPLHSGFTAS TSAVKEDNEI PSRNAVIAHS RGASRGESSD RTLKRLKPR

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MEFPQRRPLG TQGNYLKTHD FLQPLEGKNG GKEENTVEIT TAGKPPPPSL PPSGEQLILP  60
GGIGTHSMSH ISYFNQRVPK PEGDILVVAQ TSSTEGNEEN SNCSSYTGSD FTLREESALK  120
KGKTRKENIA GGRQVTTRGD DLMVKVVGGK STDQKPNNPR SKHSATEQRR RCKINDRFQM  180
LKDVIPHSDQ KRDKASFLLE VTEYIQYLQE KVHKYEGSYQ GWNQEPELMP WRNNHKPIEA  240
FVDQSQATDS GSGPALMLAA NFEENNINIF PTNPRNGQNT KEYKMKAIDQ NSEFTNMAVP  300
NVPLQSRSRA VDCAVTSKKQ KELEMSIESG TISISSVYSQ RLLNTLRQTL QNSGVDLSQA  360
SISVQIDLEK PPLHSGFTAS TSAVKEDNEI PSRNAVIAHS RGASRGESSD RTLKRLKPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-55	bHLH family protein