PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028116349.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 563aa    MW: 62332.6 Da    PI: 4.7892
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028116349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.22.7e-13214237427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e C++++rtG Ck+G++CkF+H+p
  XP_028116349.1 214 EDCSYYMRTGLCKFGSNCKFNHPP 237
                     89********************96 PP

2zf-CCCH29.61.2e-09259284227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C++++r+G CkyG  C+++H++
  XP_028116349.1 259 GQTECKYYLRSGGCKYGKACRYNHSR 284
                     6789********************95 PP

3zf-CCCH35.12.3e-11307332126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++r+G Cky ++C+F+H+
  XP_028116349.1 307 PGERECPYYMRNGSCKYESNCRFNHP 332
                     5789*********************9 PP

4zf-CCCH28.33e-09443469127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++tG Cky + CkF+H++
  XP_028116349.1 443 PGQPECSYFLKTGDCKYRSGCKFHHPK 469
                     5789*********************96 PP

5zf-CCCH34.72.9e-11493516326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+++ r+G+Ck+G+ CkF H+
  XP_028116349.1 493 QNICSHYNRYGICKFGPACKFDHP 516
                     679********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    
MEGSQQLTSL PKPFTHEEHK HSPLQLPDHQ LGLGFQPSPL DPDQILDPPP PTDELDQKTA  60
DEQLQNPQIV SQELQNQQQP ICEELRNQET TDEVLLNQQN VNRELQNQEG INEELQNLVL  120
EEREKVSEKG LDREDDGEGA ESKAEEKKGD REVSDDDAEG IDGGNDSGDD DDRSENENQD  180
ENGNENVGGE TGLVAGSKDR SYRKYNYPLK PDAEDCSYYM RTGLCKFGSN CKFNHPPRMK  240
NQAPKEKIRE KEEYPERPGQ TECKYYLRSG GCKYGKACRY NHSRGKGPVA PVAPVVEFNF  300
LGLPIRPGER ECPYYMRNGS CKYESNCRFN HPDPTAVGGG DTPCGYGNDG PVSLQGASQP  360
TISSWSTPRV LNETTVPFVP VMFSPTQGVS SSNLEWNGYQ APVYPTPVRS LPTPPAFLNT  420
PADANFYTHH TQPMLVDEFP ERPGQPECSY FLKTGDCKYR SGCKFHHPKN RMPKTAASAL  480
TLSDKGLPLR PDQNICSHYN RYGICKFGPA CKFDHPVNCG PSDSSALSGP DKPSPSGNSA  540
TTYGARMVVG GDNGSEALIQ QHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-122C3H family protein