PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028116349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 563aa MW: 62332.6 Da PI: 4.7892 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.2 | 2.7e-13 | 214 | 237 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C++++rtG Ck+G++CkF+H+p XP_028116349.1 214 EDCSYYMRTGLCKFGSNCKFNHPP 237 89********************96 PP | |||||||
2 | zf-CCCH | 29.6 | 1.2e-09 | 259 | 284 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++++r+G CkyG C+++H++ XP_028116349.1 259 GQTECKYYLRSGGCKYGKACRYNHSR 284 6789********************95 PP | |||||||
3 | zf-CCCH | 35.1 | 2.3e-11 | 307 | 332 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G Cky ++C+F+H+ XP_028116349.1 307 PGERECPYYMRNGSCKYESNCRFNHP 332 5789*********************9 PP | |||||||
4 | zf-CCCH | 28.3 | 3e-09 | 443 | 469 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Cky + CkF+H++ XP_028116349.1 443 PGQPECSYFLKTGDCKYRSGCKFHHPK 469 5789*********************96 PP | |||||||
5 | zf-CCCH | 34.7 | 2.9e-11 | 493 | 516 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++ r+G+Ck+G+ CkF H+ XP_028116349.1 493 QNICSHYNRYGICKFGPACKFDHP 516 679********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence |
MEGSQQLTSL PKPFTHEEHK HSPLQLPDHQ LGLGFQPSPL DPDQILDPPP PTDELDQKTA 60 DEQLQNPQIV SQELQNQQQP ICEELRNQET TDEVLLNQQN VNRELQNQEG INEELQNLVL 120 EEREKVSEKG LDREDDGEGA ESKAEEKKGD REVSDDDAEG IDGGNDSGDD DDRSENENQD 180 ENGNENVGGE TGLVAGSKDR SYRKYNYPLK PDAEDCSYYM RTGLCKFGSN CKFNHPPRMK 240 NQAPKEKIRE KEEYPERPGQ TECKYYLRSG GCKYGKACRY NHSRGKGPVA PVAPVVEFNF 300 LGLPIRPGER ECPYYMRNGS CKYESNCRFN HPDPTAVGGG DTPCGYGNDG PVSLQGASQP 360 TISSWSTPRV LNETTVPFVP VMFSPTQGVS SSNLEWNGYQ APVYPTPVRS LPTPPAFLNT 420 PADANFYTHH TQPMLVDEFP ERPGQPECSY FLKTGDCKYR SGCKFHHPKN RMPKTAASAL 480 TLSDKGLPLR PDQNICSHYN RYGICKFGPA CKFDHPVNCG PSDSSALSGP DKPSPSGNSA 540 TTYGARMVVG GDNGSEALIQ QHV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-122 | C3H family protein |