PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028116289.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 558aa    MW: 62536.6 Da    PI: 5.9594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028116289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.22.1e-1291865551373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elL+ecA+a+s+++le  ++l++  +  +s +g+p+qRl ay++e+L ar   s++++y++l+++e +    ++ l+++++++e++P+lkf++
  XP_028116289.1 186 LKELLIECAKALSENKLEDFKKLIEMARSAVSISGEPIQRLGAYMVEGLVARKEASGNNIYRTLQCKEPE---GKDLLSYMQILYEICPYLKFGY 277
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI +a  +e+r+HiiD++i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + l+++++ La +  ++++p+ef++ v     d
  XP_028116289.1 278 MAANGAIADACRTEDRIHIIDYQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLQAVERLLAAISGKFNIPVEFHP-VPVFAPD 371
                     *******************************************************999999**************************.688899* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+++pgEal+Vn+ lqlh+++desv+++++rd +L++vkslsPkvv+++eqe+++n+++Fl rf+eale+ysa+f+s+++++pr+ +eri
  XP_028116289.1 372 VTRDMLDIRPGEALVVNFPLQLHHTPDESVDVRNPRDGLLRMVKSLSPKVVTLIEQESNTNTAPFLSRFIEALEFYSAMFESIDMTMPRDRKERI 466
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivn++aceg+er+erhe l+kW++r+++aGF+++pls+++++ +++l+r ++ + y++ e +g+++lgWkdr+Lvs+SaW
  XP_028116289.1 467 NVEQHCLARDIVNIIACEGKERVERHELLGKWKSRFTMAGFRQYPLSSYVNSVIRALMRCYS-EHYTLVETDGAMLLGWKDRNLVSASAW 555
                     ********************************************************999888.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MDSRQFFGYG VTGAADLSSY SSHPTVPSIP TTLFDSLKFD LRSSHFSPRF HSETHSTVSD  60
SPDHHSSTDN LSGASPSCNS SLEISSRFQQ LSPSLDSRQD SLQFRFGESL FFHNENRGHN  120
VNYALQELET ALMGPDDNEE ETTPTPSFGK NKQPQTRATQ SQPSNVERPD KAMEEAAFQS  180
IPPGNLKELL IECAKALSEN KLEDFKKLIE MARSAVSISG EPIQRLGAYM VEGLVARKEA  240
SGNNIYRTLQ CKEPEGKDLL SYMQILYEIC PYLKFGYMAA NGAIADACRT EDRIHIIDYQ  300
IAQGTQWMTL LQALAARPSG APHVRITGID DPVSKYARGD GLQAVERLLA AISGKFNIPV  360
EFHPVPVFAP DVTRDMLDIR PGEALVVNFP LQLHHTPDES VDVRNPRDGL LRMVKSLSPK  420
VVTLIEQESN TNTAPFLSRF IEALEFYSAM FESIDMTMPR DRKERINVEQ HCLARDIVNI  480
IACEGKERVE RHELLGKWKS RFTMAGFRQY PLSSYVNSVI RALMRCYSEH YTLVETDGAM  540
LLGWKDRNLV SASAWHCA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-176GRAS family protein