PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028115485.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 546aa    MW: 60654.5 Da    PI: 5.9751
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028115485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4141.4e-1261745461374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cAeavs++d+e a++l+ +l+ ++s  g+p+qRl ay++e+L+arl++s+s +yk+l+++e    +sse +++++++++++P++kf++
  XP_028115485.1 174 LKQMLVACAEAVSEEDMETASRLMLKLEGMVSVCGEPIQRLGAYMLEGLRARLLSSGSLIYKKLKCREVL-PTSSELMSYMHVLYQICPYYKFAY 267
                     5799****************************************************************98.5789999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN  I ea+e+e+r+HiiDf++ qG QW+ L++ La+Rp+gpp +RiTgv++++s   +   l  +gerL+k+A+++gv+f f+  +a +  +
  XP_028115485.1 268 NSANVVIKEAMENESRIHIIDFQLAQGSQWVDLIKDLAKRPGGPPYIRITGVDDSDSAhaRGGGLDIVGERLSKVAASCGVSFGFHG-AAMSGCE 361
                     ******************************************************8887889999***********************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +el +Lrv++gEalaVn+ ++lh+++desv+++++rd++L+lvkslsPkv+++veqe+++n++ F+ rf e+l+yy+a+f+s++a  pr++++ri
  XP_028115485.1 362 VELTNLRVQHGEALAVNFPYMLHHMPDESVTTSNHRDRLLRLVKSLSPKVMILVEQESNTNTAAFVPRFKETLDYYMAMFESIDAARPRDDKQRI 456
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn++acegaer+erhe ++kWr+rl++aGF p p+s+++  +++++l+ ++++ +r  e++g l+lgWk+r L + SaWr
  XP_028115485.1 457 SAEEHCVARDIVNIIACEGAERVERHEPFGKWRSRLMMAGFMPCPMSSSVSIEISRVLKDYSKN-FRFAERDGVLYLGWKNRVLATSSAWR 546
                     **************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MQPSQEQQSS GSIHGLYHQP MQQIEPYCIS PFQILTNNVF PENGSQATQV SFQSYNEPYF  60
TLESSPANGY IVYDSPPAVS ISSNRTPFSP QGSQSYLSDP HHSSDNTYGS TVSGSSVVDD  120
GNGLRHILKD LENKLLGPES DDDISSCSFK GAGHQAYSST SSNQMMETSP SLDLKQMLVA  180
CAEAVSEEDM ETASRLMLKL EGMVSVCGEP IQRLGAYMLE GLRARLLSSG SLIYKKLKCR  240
EVLPTSSELM SYMHVLYQIC PYYKFAYNSA NVVIKEAMEN ESRIHIIDFQ LAQGSQWVDL  300
IKDLAKRPGG PPYIRITGVD DSDSAHARGG GLDIVGERLS KVAASCGVSF GFHGAAMSGC  360
EVELTNLRVQ HGEALAVNFP YMLHHMPDES VTTSNHRDRL LRLVKSLSPK VMILVEQESN  420
TNTAAFVPRF KETLDYYMAM FESIDAARPR DDKQRISAEE HCVARDIVNI IACEGAERVE  480
RHEPFGKWRS RLMMAGFMPC PMSSSVSIEI SRVLKDYSKN FRFAERDGVL YLGWKNRVLA  540
TSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein