PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028114988.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25828.3 Da    PI: 10.5546
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028114988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.84.9e-12242141
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    krienk    vt+ kR+  ++K   ELS+LC++++   +fs
  XP_028114988.1  2 KRIENKKALRVTYMKRKDSVIKRTMELSILCGINIVTTLFS 42
                    79********************************9887777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MKRIENKKAL RVTYMKRKDS VIKRTMELSI LCGINIVTTL FSAQWRGQHV APNPNEVKAL  60
IKMYKESAKK SLAKKSRESS FSDCCLGAEK VARKERTVLS KGQWSSRFSA VSISSHSVFG  120
PNGEVNTWPQ NPNEVKALIK MYKESAKKSL AKKSRESSFS DCCLGAEKVA KKVLMGNKDG  180
YGLLDGLSVE SVISFLEKLE SKLEVLKARI EFLKMLNEQK NRVLVMGKET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-08M-type_MADS family protein