PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028114710.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 418aa MW: 46021.7 Da PI: 8.8896

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028114710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.1	1.4e-39	173	250	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akeyhr+h+vCe hsk+++v+v gle+rfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+ XP_028114710.1 173 RCQVEGCNLDLSSAKEYHRKHRVCESHSKCAKVVVCGLERRFCQQCSRFHNLSEFDEKKRSCRKRLSDHNARRRKPQQ 250 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MDWNAKWDWE NLITFNSKTV ESPKKQPTDW EIGEGEIDTV SFNLSGGGAV GSSSDLAHGS 60 SARSSVSASM DSSSKEISKM SKIAVEAFHD FPEDFGKKNE LARTELAGTS LPLEPSVSSG 120 ELLIGLKLGK RTYFENNYAG DNAKTSSLSV IPVSSAASTA KKIKSSSQTH RPRCQVEGCN 180 LDLSSAKEYH RKHRVCESHS KCAKVVVCGL ERRFCQQCSR FHNLSEFDEK KRSCRKRLSD 240 HNARRRKPQQ DAIQFDSSML LSSPFLDGKQ QMCFALNNTP LLRTRSSANP TWESACSSKY 300 FTLTKGHLSR SGKTGGIDGQ PQLPGIELSH SISMLGQNTR AEIFTRGPKE SMLSSNLDAV 360 PNLHRALSLL STDSWGSESP NIIPDHPIQR NFTSMPQFAM LPQVAISRES RSSSHPIC

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MDWNAKWDWE NLITFNSKTV ESPKKQPTDW EIGEGEIDTV SFNLSGGGAV GSSSDLAHGS  60
SARSSVSASM DSSSKEISKM SKIAVEAFHD FPEDFGKKNE LARTELAGTS LPLEPSVSSG  120
ELLIGLKLGK RTYFENNYAG DNAKTSSLSV IPVSSAASTA KKIKSSSQTH RPRCQVEGCN  180
LDLSSAKEYH RKHRVCESHS KCAKVVVCGL ERRFCQQCSR FHNLSEFDEK KRSCRKRLSD  240
HNARRRKPQQ DAIQFDSSML LSSPFLDGKQ QMCFALNNTP LLRTRSSANP TWESACSSKY  300
FTLTKGHLSR SGKTGGIDGQ PQLPGIELSH SISMLGQNTR AEIFTRGPKE SMLSSNLDAV  360
PNLHRALSLL STDSWGSESP NIIPDHPIQR NFTSMPQFAM LPQVAISRES RSSSHPIC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	247	KKRSCRKRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	6e-67	SBP family protein