PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028114368.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 153aa MW: 17917.2 Da PI: 10.3483 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.5 | 5.4e-16 | 15 | 64 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk vt+ kR + ++KK ELS+L ++++ ++f+++gk+ +++ XP_028114368.1 15 KRIENKKALRVTYMKRNECVIKKTMELSILYGTNIVTLYFGPNGKVDTWP 64 79***********************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence |
MEHHKKGKKI RRPMKRIENK KALRVTYMKR NECVIKKTME LSILYGTNIV TLYFGPNGKV 60 DTWPQNPNEV KTLIKMYKEY TKKSQVRKSR ESSFSDCCLG AKKVAKKVSM ENEDGYGWLY 120 GLSAESVISF LEKLESKLEI LKVRIEFLKM LNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02235.1 | 2e-10 | M-type_MADS family protein |