PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028114285.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 668aa MW: 73246.5 Da PI: 6.17

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028114285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.5e-08	281	301	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G+C++Gd C +aHg XP_028114285.1 281 PCPDFRK-GQCRRGDLCEYAHG 301 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MPNLTGTPKI EISFSSLLEL AADNDIEGFK QSILCIASSI NEMGLWYCRQ RASKQMVLEY 60 RTPLMVAAMY GSVDVVKLIL SLSEADVNLS CGPDKSTALH CAASSGSVNA IDVVKLLLFA 120 GADCNSIDAN GHRPIDVIVA PLKFPYLKDA LEELLRNDDY VHLPDMKVSL SGEKSNSSTP 180 SSSPEYDPLS SVEDSTSSLK LFSLSDMHAS PAPEKKEYPV DPSLPDIKNS VYSTDEFRMF 240 SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGQC RRGDLCEYAH 300 GVFECWLHPA QYRTRLCKDG TSCARRVCFF AHTSEELRPL YMSTGSAVPS PRSSTSAATV 360 MDMAVALSLL PGSPSAPISP SGNAISHPSV AWPQPNIPTL HLPGSNLQTS RLRSSFNARD 420 IPTEELNMLL DFEVQQQQLL NDMSCFSPTH LRKFPIRSKT LTPSNLDELF STEVSSPRFS 480 DQVAPPAVFS PSHKAVVRNQ FQQQQNVLSP NNTNLYSPKN VDHPFLQASS YHVSSPGRMS 540 PRGIDMQSPF SPRLSALGSK GAGIVGSPVN SLSNWDSPNG KVDWSVNGDE LAGVRRSFSV 600 GRNGEEPDLS WVQSLVKESP PEIKETSNLP VSGATSSVEG SDLNSNEKLD HAVLGAWLEQ 660 MQLDQIVA

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MPNLTGTPKI EISFSSLLEL AADNDIEGFK QSILCIASSI NEMGLWYCRQ RASKQMVLEY  60
RTPLMVAAMY GSVDVVKLIL SLSEADVNLS CGPDKSTALH CAASSGSVNA IDVVKLLLFA  120
GADCNSIDAN GHRPIDVIVA PLKFPYLKDA LEELLRNDDY VHLPDMKVSL SGEKSNSSTP  180
SSSPEYDPLS SVEDSTSSLK LFSLSDMHAS PAPEKKEYPV DPSLPDIKNS VYSTDEFRMF  240
SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGQC RRGDLCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCARRVCFF AHTSEELRPL YMSTGSAVPS PRSSTSAATV  360
MDMAVALSLL PGSPSAPISP SGNAISHPSV AWPQPNIPTL HLPGSNLQTS RLRSSFNARD  420
IPTEELNMLL DFEVQQQQLL NDMSCFSPTH LRKFPIRSKT LTPSNLDELF STEVSSPRFS  480
DQVAPPAVFS PSHKAVVRNQ FQQQQNVLSP NNTNLYSPKN VDHPFLQASS YHVSSPGRMS  540
PRGIDMQSPF SPRLSALGSK GAGIVGSPVN SLSNWDSPNG KVDWSVNGDE LAGVRRSFSV  600
GRNGEEPDLS WVQSLVKESP PEIKETSNLP VSGATSSVEG SDLNSNEKLD HAVLGAWLEQ  660
MQLDQIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein