PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028114078.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 423aa MW: 46414.2 Da PI: 9.5827

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028114078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.1	3.8e-17	74	133	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_028114078.1 74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 133 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MASSSSEPAL KAETGGGGGG GSGGSGGETS EAAVIANDQL LLYRGLKKAR KERGCTAKER 60 ISKMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA 120 ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRA 180 LSSRWDPSLG RMAGPDYFNS INYGTGEDEG EYSGGFCIER KIDLTPYIKW WGPSKSRQSD 240 SLSKSSEETK HGHSDDIGSE LKTLEWAIQP TEPYQMPRLG MFHEGKKKGS LSAMSILSRS 300 AAYKSLQEKA SKKQENKTDN DENENKCTIS KMDYGKAVEK SSHDGRSEGL GVALGAGGGG 360 LPLQRNMYPL APFLSAPLLT NYNTIDPLSD PVLWTTLVPV LPPGLPRAAE KQIILRAMVK 420 ARA

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MASSSSEPAL KAETGGGGGG GSGGSGGETS EAAVIANDQL LLYRGLKKAR KERGCTAKER  60
ISKMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA  120
ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRA  180
LSSRWDPSLG RMAGPDYFNS INYGTGEDEG EYSGGFCIER KIDLTPYIKW WGPSKSRQSD  240
SLSKSSEETK HGHSDDIGSE LKTLEWAIQP TEPYQMPRLG MFHEGKKKGS LSAMSILSRS  300
AAYKSLQEKA SKKQENKTDN DENENKCTIS KMDYGKAVEK SSHDGRSEGL GVALGAGGGG  360
LPLQRNMYPL APFLSAPLLT NYNTIDPLSD PVLWTTLVPV LPPGLPRAAE KQIILRAMVK  420
ARA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-135	AP2 family protein