PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028113978.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 400aa MW: 44675.4 Da PI: 7.8623

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028113978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_028113978.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	24.5	4.8e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ XP_028113978.1 34 VCTFYQK-GVCSYGSRCRYEHV 54 6****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNVCTFYQK GVCSYGSRCR YEHVKVSRSQ 60 SSTASSSTIS HQFLVSDSTA VTCSSRTASG GLTTVPGLTS ELSASSRPFF PPAKVSWNQT 120 SGHRSLLDID DVDDSKSLDP ADLSICSFAA AGCCPRGDKC PHIHGHLCPS CGKHCLHPFR 180 PQEREEHIKT CEKKQNHLEA LKHSQDIECS VCLERVLSKP TAAERKFGVL SECDHPFCIS 240 CIRNWRSSSP TSGMDVNSTL RACPICRKVS YFVIPSVIWY STKEEKQEIV DSYKAKLRSI 300 DCKHFDFGNG TCPFGTSCFY KHTVKPGSYL WNSTLMTDVY SSSFPDMDAI EFSSHSFDNH 360 AYRDGRLEEV VLRHLGAEDG HTVIAKNIRL SDFLRSLHIR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNVCTFYQK GVCSYGSRCR YEHVKVSRSQ  60
SSTASSSTIS HQFLVSDSTA VTCSSRTASG GLTTVPGLTS ELSASSRPFF PPAKVSWNQT  120
SGHRSLLDID DVDDSKSLDP ADLSICSFAA AGCCPRGDKC PHIHGHLCPS CGKHCLHPFR  180
PQEREEHIKT CEKKQNHLEA LKHSQDIECS VCLERVLSKP TAAERKFGVL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSTL RACPICRKVS YFVIPSVIWY STKEEKQEIV DSYKAKLRSI  300
DCKHFDFGNG TCPFGTSCFY KHTVKPGSYL WNSTLMTDVY SSSFPDMDAI EFSSHSFDNH  360
AYRDGRLEEV VLRHLGAEDG HTVIAKNIRL SDFLRSLHIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-150	C3H family protein