PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028113976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 400aa MW: 44675.4 Da PI: 7.8623 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_028113976.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 24.5 | 4.8e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ XP_028113976.1 34 VCTFYQK-GVCSYGSRCRYEHV 54 6******.***********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence |
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNVCTFYQK GVCSYGSRCR YEHVKVSRSQ 60 SSTASSSTIS HQFLVSDSTA VTCSSRTASG GLTTVPGLTS ELSASSRPFF PPAKVSWNQT 120 SGHRSLLDID DVDDSKSLDP ADLSICSFAA AGCCPRGDKC PHIHGHLCPS CGKHCLHPFR 180 PQEREEHIKT CEKKQNHLEA LKHSQDIECS VCLERVLSKP TAAERKFGVL SECDHPFCIS 240 CIRNWRSSSP TSGMDVNSTL RACPICRKVS YFVIPSVIWY STKEEKQEIV DSYKAKLRSI 300 DCKHFDFGNG TCPFGTSCFY KHTVKPGSYL WNSTLMTDVY SSSFPDMDAI EFSSHSFDNH 360 AYRDGRLEEV VLRHLGAEDG HTVIAKNIRL SDFLRSLHIR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-150 | C3H family protein |