PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028112419.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18159.2 Da    PI: 10.8534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028112419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33e-21954146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    kr e+ sn+qvt+s+RrngilKKA+EL +LCd+++ +++fs+tgk 
  XP_028112419.1  9 KRLESISNQQVTYSRRRNGILKKAKELFILCDIDIVLLMFSPTGKA 54
                    688999**************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MGRVKLKIKR LESISNQQVT YSRRRNGILK KAKELFILCD IDIVLLMFSP TGKATLFRRE  60
YSNIEEVITK FTQLTPQKRT KRIQEQIRKK RLKFPTKSEK GMGIDTNPFP EIGEAAAQVG  120
MPDFQNLSLK ELEEVTMQMH VASQAAFRKN TRSSPVDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17892KRTKRIQEQIRKKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-41M-type_MADS family protein