PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028112174.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 343aa    MW: 39006.6 Da    PI: 6.7379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028112174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-09137157526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f+r G C++Gd+C FaHg
  XP_028112174.1 137 VCPDFRR-GSCSRGDNCEFAHG 157
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MGSICGESHQ QHKFHPSQQL LLLLTKKTMT HLNIPPRKLL LPTSIPHSSL TLDSLRSEEA  60
LHQNFLPYNG LHDDDDEQEE EDSTTNPYSS DHFRIYEFKV RRCPRSRTHD WTDCPFAHPG  120
EKARRRDPRR FHYSGTVCPD FRRGSCSRGD NCEFAHGVFE CWLHPARYRT EACKDGENCK  180
RKVCFFAHSP RQLRLLSPPE IKYYRNSIHC CCPFCHSVSA SPTSTLMGLS PPISPPLSYK  240
DVLTTELMSS LESMNLNEXI HILPLLLRKE CRMPLWVDVS LSNGDEYDQL QFILSPSTTS  300
PSGSTGFCSN GDDSSSKSLN NDEKLNDNGL ACPDLGWVND LLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-74C3H family protein